PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 333554
Common NameARALYDRAFT_333554
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family NAC
Protein Properties Length: 466aa    MW: 53158 Da    PI: 4.9611
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
333554genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM125.35.1e-3951373127
     NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk......kg 97 
             +G+ F+Ptd+elv +yL++k+ gk+  +e +i+ev+i++++Pw+L+  +k+k+++  wyfFs+r++ky++g+r++r+t+sg+Wk tg+  +v+++      + 
  333554   5 VGYGFRPTDDELVGYYLHNKILGKNWLVEGAINEVNICSFDPWNLRfqSKIKSRDPMWYFFSRRENKYTNGNRQSRTTDSGFWKVTGEPVDVKDQwgtwctTP 107
             799**********************999899**************85348888888**************************************988887766 PP

     NAM  98 elvglkktLvfykgrapkgektdWvmheyr 127
              ++g k++Lvf kgr ++ +k+dWv+he++
  333554 108 GKIGHKRVLVFLKGRISDKTKSDWVIHEFH 137
             67***************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100541.9583156IPR003441NAC domain
SuperFamilySSF1019411.96E-404156IPR003441NAC domain
PfamPF023654.0E-205137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MEDLVGYGFR PTDDELVGYY LHNKILGKNW LVEGAINEVN ICSFDPWNLR FQSKIKSRDP  60
MWYFFSRREN KYTNGNRQSR TTDSGFWKVT GEPVDVKDQW GTWCTTPGKI GHKRVLVFLK  120
GRISDKTKSD WVIHEFHDDL LPEHERTYVI CRLEYKGNDK SILSANATDP TPTFVPNMTS  180
SAGSVVNQSR QGNSASYNTY SEYDSANHGQ QNFNMQLPVQ GNLGSLNHFS EYDSANLGGN  240
FDMQQPVEGY AGSFNLLPEY DLANHGGQWL SDYINLQQQV PYLAPYENES EMIWKSVVEE  300
NFESLIDERT SMQEHYSDYR PKKPVTGVLP DDSSDTETGS MIFEDTSSST DSVGSSDEPC  360
HTPIDDIQPL NTSKPSHNYE AQEQPNQLKL PYQNKEKVIY SQKSEYEWKM AEDSIKKPLS  420
NNTVKQSRIV LEKRSQRNAQ WNYLKNMIIG VLLFISIIGS IILVG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-22613718139Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). {ECO:0000250|UniProtKB:Q949N0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap333554
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, drought stress and methyl methanesulfonate (MMS) treatment. {ECO:0000269|PubMed:17158162}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002892089.10.0NAC domain-containing protein 1
SwissprotQ0WV960.0NAC1_ARATH; NAC domain-containing protein 1
TrEMBLD7KQC40.0D7KQC4_ARALL; ANAC001
STRINGfgenesh1_pg.C_scaffold_10001190.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM76581640
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01010.10.0NAC domain containing protein 1
Publications ? help Back to Top
  1. Davuluri RV, et al.
    AGRIS: Arabidopsis gene regulatory information server, an information resource of Arabidopsis cis-regulatory elements and transcription factors.
    BMC Bioinformatics, 2003. 4: p. 25
    [PMID:12820902]
  2. Palaniswamy SK, et al.
    AGRIS and AtRegNet. a platform to link cis-regulatory elements and transcription factors into regulatory networks.
    Plant Physiol., 2006. 140(3): p. 818-29
    [PMID:16524982]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Liang M, et al.
    Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana.
    Traffic, 2015. 16(10): p. 1062-74
    [PMID:26201836]