PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

333558

Common Name

ARALYDRAFT_333558

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

NAC

Protein Properties

Length: 217aa MW: 25099.2 Da PI: 6.8896

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
333558	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	135	5e-42	4	132	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kgel 99 p+GfrF+Ptdee+v++yL+ k +++ +++evi++vdi+++ePw+Lp + ++k+++ w+fF ++++ky++g+r+ r+tksg+Wk+tg + ++++k ++e+ 333558 4 PVGFRFRPTDEEIVDHYLRVKNLESDtSHVDEVISTVDICSLEPWNLPsQsMIKSSDAVWHFFGRKENKYNRGDRQMRKTKSGFWKKTGVTINIMRKrgNREK 106 89***************99666553778889**********96347888999**********************************9877888 PP NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 +g kk+L+fy +k+ k+dWvmhey++ 333558 107 IGEKKVLMFYF---NKSLKSDWVMHEYHA 132 ******4...45568******96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	43.669	3	150	IPR003441	NAC domain
SuperFamily	SSF101941	3.4E-44	3	150	IPR003441	NAC domain
Pfam	PF02365	3.8E-23	4	131	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 217 aa Download sequence Send to blast
MVNPVGFRFR PTDEEIVDHY LRVKNLESDT SHVDEVISTV DICSLEPWNL PSQSMIKSSD 60 AVWHFFGRKE NKYNRGDRQM RKTKSGFWKK TGVTINIMRK RGNREKIGEK KVLMFYFNKS 120 LKSDWVMHEY HATFSSPNLM TYTLCKVKFK GESREGSVSS GSGIELTHSL IPHTNDFGVF 180 SVETEEETQL EDAVRRAINN ISTDDWDSLF NDDEQR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	6e-24	4	155	18	170	NO APICAL MERISTEM PROTEIN
1ut4_B	6e-24	4	155	18	170	NO APICAL MERISTEM PROTEIN
1ut7_A	6e-24	4	155	18	170	NO APICAL MERISTEM PROTEIN
1ut7_B	6e-24	4	155	18	170	NO APICAL MERISTEM PROTEIN
3swm_A	6e-24	4	155	21	173	NAC domain-containing protein 19
3swm_B	6e-24	4	155	21	173	NAC domain-containing protein 19
3swm_C	6e-24	4	155	21	173	NAC domain-containing protein 19
3swm_D	6e-24	4	155	21	173	NAC domain-containing protein 19
3swp_A	6e-24	4	155	21	173	NAC domain-containing protein 19
3swp_B	6e-24	4	155	21	173	NAC domain-containing protein 19
3swp_C	6e-24	4	155	21	173	NAC domain-containing protein 19
3swp_D	6e-24	4	155	21	173	NAC domain-containing protein 19
3ulx_A	7e-24	4	130	16	138	Stress-induced transcription factor NAC1
4dul_A	6e-24	4	155	18	170	NAC domain-containing protein 19
4dul_B	6e-24	4	155	18	170	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	333558

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020866030.1	1e-157	LOW QUALITY PROTEIN: NAC domain-containing protein 5
Swissprot	O81914	1e-105	NAC5_ARATH; NAC domain-containing protein 5
TrEMBL	D7KB65	1e-160	D7KB65_ARALL; Uncharacterized protein
STRING	fgenesh1_pg.C_scaffold_1000123	1e-161	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2315	16	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G02250.1	4e-98	NAC domain containing protein 5

Link Out ? help Back to Top
Phytozome	333558
Entrez Gene	9328156

Publications ? help Back to Top
Jiang J,Zhang Z,Cao J Pollen wall development: the associated enzymes and metabolic pathways. Plant Biol (Stuttg), 2013. 15(2): p. 249-63 [PMID:23252839]