PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

335316

Common Name

ARALYDRAFT_335316

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

WOX

Protein Properties

Length: 207aa MW: 23336 Da PI: 6.252

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
335316	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	66	5.1e-21	88	148	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t++ql++Le+ +e+ + +p++++++e+A++l ++te++V++WFqNrRa+ k+ 335316 88 RHRWTPTSTQLQILESIYEEgSGTPNRRRIREIATELsehgQITETNVYNWFQNRRARSKR 148 89***************99************************************97 PP
2	Wus_type_Homeobox	101.8	4.9e-33	87	150	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RWtPt++Q++iLe++y++G tPn+++i++i++eL+e+G+i+++NV++WFQNr+aR+++kq 335316 87 TRHRWTPTSTQLQILESIYEEGSGTPNRRRIREIATELSEHGQITETNVYNWFQNRRARSKRKQ 150 689***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.2E-16	81	153	IPR009057	Homeodomain-like
SuperFamily	SSF46689	8.13E-19	82	153	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.9	84	149	IPR001356	Homeobox domain
SMART	SM00389	8.2E-14	86	153	IPR001356	Homeobox domain
CDD	cd00086	4.62E-14	88	150	No hit	No description
Pfam	PF00046	1.2E-18	88	148	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0001944	Biological Process	vasculature development
GO:0010072	Biological Process	primary shoot apical meristem specification
GO:0051301	Biological Process	cell division
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 207 aa Download sequence Send to blast
MEKEKSKLIE EMERETQNGA YNGRVMTEEQ MEILRKQIAV YAVICDQLVL LHNSLSSFNP 60 LSSGVRPVVG GYFDPMGTSS SSHRISTRHR WTPTSTQLQI LESIYEEGSG TPNRRRIREI 120 ATELSEHGQI TETNVYNWFQ NRRARSKRKQ PQTTTANGQA DDVTVTAEER RSCGDSGGLE 180 SYEHILFPSP DLGIEHLLSI GKFMES*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	141	149	RRARSKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	335316

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ441297	0.0	AJ441297.1 Arabidopsis thaliana mRNA for homeodomain protein PALE-2 (pale-2 gene).

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002890403.1	1e-153	WUSCHEL-related homeobox 14
Swissprot	Q9LM84	1e-139	WOX14_ARATH; WUSCHEL-related homeobox 14
TrEMBL	D7KJ49	1e-152	D7KJ49_ARALL; Homeobox-leucine zipper family protein
STRING	fgenesh1_pg.C_scaffold_1001881	1e-152	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12211	17	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20700.1	1e-130	WUSCHEL related homeobox 14

Link Out ? help Back to Top
Phytozome	335316
Entrez Gene	9326465

Publications ? help Back to Top
Denis E, et al. WOX14 promotes bioactive gibberellin synthesis and vascular cell differentiation in Arabidopsis. Plant J., 2017. 90(3): p. 560-572 [PMID:28218997]