PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 335587
Common NameARALYDRAFT_335587
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family YABBY
Protein Properties Length: 237aa    MW: 26589 Da    PI: 6.3404
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
335587genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY257.91.6e-7961752169
   YABBY   2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas....qllaaeshldeslkeelleelkveeenlksnvekeesastsvssek 100
             ++ + ++q+C+vqC+fC+til+vsvP+tsl++vvtvrCGhCtsllsvnl+kas    +lla+ shlde++kee+++++ veee++k+n+eke+s++t vss  
  335587   6 HLLDLPGQICHVQCGFCTTILLVSVPFTSLSMVVTVRCGHCTSLLSVNLMKASfiplHLLASLSHLDETGKEEVAATDAVEEEAWKVNQEKENSPTTLVSS-- 106
             667899*********************************************9999999******************************************9.. PP

   YABBY 101 lsenedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfg 169
              s+nede+v+rv++ v++PPekrqr+Psayn+fikeei+r+ka+nP+++h+eafs+aaknWahfP++h++
  335587 107 -SDNEDEDVSRVYQvVNKPPEKRQRAPSAYNCFIKEEIRRLKAQNPSMAHKEAFSLAAKNWAHFPPVHNK 175
             .99***********899***************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046904.0E-6111174IPR006780YABBY protein
SuperFamilySSF470956.41E-9116171IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.109.1E-6122171IPR009071High mobility group box domain
CDDcd000840.00393130166No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MTTLNHLLDL PGQICHVQCG FCTTILLVSV PFTSLSMVVT VRCGHCTSLL SVNLMKASFI  60
PLHLLASLSH LDETGKEEVA ATDAVEEEAW KVNQEKENSP TTLVSSSDNE DEDVSRVYQV  120
VNKPPEKRQR APSAYNCFIK EEIRRLKAQN PSMAHKEAFS LAAKNWAHFP PVHNKRAASD  180
QCFCEEDNNA ILPCNAFEDH EESNNGFRER KAQRHSIWGK SPFEYNNLGY EILTKK*
Functional Description ? help Back to Top
Source Description
UniProtEssential for the formation and the abaxial-adaxial asymmetric growth of the ovule outer integument. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap335587
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Autoinduction down-regulated by SUP in adaxial region of the ovule outer integument. Negatively and spatially regulated by HLL, ANT, BELL1, NZZ/SPL and SUP. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:12183381}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1950470.0AF195047.1 Arabidopsis thaliana INNER NO OUTER (INO) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002890581.21e-178axial regulator YABBY 4 isoform X2
SwissprotQ9LDT31e-166YAB4_ARATH; Axial regulator YABBY 4
TrEMBLD7KNF61e-177D7KNF6_ARALL; Uncharacterized protein
STRINGfgenesh1_pg.C_scaffold_10021521e-177(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM80442740
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23420.11e-138YABBY family protein
Publications ? help Back to Top
  1. Lora J,Hormaza JI,Herrero M
    Transition from two to one integument in Prunus species: expression pattern of INNER NO OUTER (INO), ABERRANT TESTA SHAPE (ATS) and ETTIN (ETT).
    New Phytol., 2015. 208(2): p. 584-95
    [PMID:25991552]
  2. Skinner DJ,Brown RH,Kuzoff RK,Gasser CS
    Conservation of the role of INNER NO OUTER in development of unitegmic ovules of the Solanaceae despite a divergence in protein function.
    BMC Plant Biol., 2016. 16(1): p. 143
    [PMID:27350128]
  3. Simon MK,Skinner DJ,Gallagher TL,Gasser CS
    Integument Development in Arabidopsis Depends on Interaction of YABBY Protein INNER NO OUTER with Coactivators and Corepressors.
    Genetics, 2017. 207(4): p. 1489-1500
    [PMID:28971961]