PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

336031

Common Name

ARALYDRAFT_336031, WRKY65

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

WRKY

Protein Properties

Length: 260aa MW: 29207.5 Da PI: 5.1424

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
336031	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	99.9	1.5e-31	74	132	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers++dp+++ itY++eHnh+ 336031 74 SDSWAWRKYGQKPIKGSPYPRGYYRCSSTkGCPARKQVERSRDDPTMILITYTSEHNHP 132 69***********************998**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.2E-32	65	134	IPR003657	WRKY domain
PROSITE profile	PS50811	32.294	68	134	IPR003657	WRKY domain
SuperFamily	SSF118290	2.09E-27	69	134	IPR003657	WRKY domain
SMART	SM00774	5.6E-38	73	133	IPR003657	WRKY domain
Pfam	PF03106	1.2E-26	75	132	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 260 aa Download sequence Send to blast
MKRGLEMARN YNDHESSQET GPESPNSSTF NDMKALISSH SPKRSRRSIE KRVVNVPMKE 60 MEGSRHKGDT TPPSDSWAWR KYGQKPIKGS PYPRGYYRCS STKGCPARKQ VERSRDDPTM 120 ILITYTSEHN HPWPITSSTR NGPKPKPEPK PEPEPEVEPE AEEEDNKFMV LGREIETTPS 180 CVDEFAWFTE METTSSTILE SPIFSSEKKT AASAADDVAV FFPLGEEDES LFADLGELPE 240 CSVVFRHRSS VVGSQVEIF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	2e-21	51	134	6	79	Disease resistance protein RRS1
5w3x_D	2e-21	51	134	6	79	Disease resistance protein RRS1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00167	DAP	Transfer from AT1G29280	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	336031

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF452173	0.0	AF452173.1 Arabidopsis thaliana WRKY transcription factor 65 (WRKY65) mRNA, complete cds.
GenBank	BT026354	0.0	BT026354.1 Arabidopsis thaliana At1g29280 gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002890801.1	0.0	probable WRKY transcription factor 65 isoform X1
Swissprot	Q9LP56	1e-169	WRK65_ARATH; Probable WRKY transcription factor 65
TrEMBL	D7KDS0	0.0	D7KDS0_ARALL; WRKY DNA-binding protein 65
STRING	fgenesh1_pg.C_scaffold_1002596	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5383	28	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29280.1	1e-161	WRKY DNA-binding protein 65

Link Out ? help Back to Top
Phytozome	336031
Entrez Gene	9326863

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Singh V,Roy S,Singh D,Nandi AK Arabidopsis flowering locus D influences systemic-acquired-resistance- induced expression and histone modifications of WRKY genes. J. Biosci., 2014. 39(1): p. 119-26 [PMID:24499796]