PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 336095
Common NameARALYDRAFT_336095
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family M-type_MADS
Protein Properties Length: 220aa    MW: 24759.6 Da    PI: 9.7921
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
336095genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF50.82.1e-161564150
            S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
  SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
            k+ie +  r vt+skRrngi  K +ELS+LC+aeva + +s +gk y++ 
  336095 15 KKIEKDEDRLVTLSKRRNGIYTKLSELSILCGAEVAFLGYSCSGKPYTFG 64
            689*********************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554552.49E-22777IPR002100Transcription factor, MADS-box
PROSITE profilePS5006621.909767IPR002100Transcription factor, MADS-box
SMARTSM004324.6E-20766IPR002100Transcription factor, MADS-box
CDDcd002652.46E-31879No hitNo description
PRINTSPR004048.2E-15929IPR002100Transcription factor, MADS-box
PfamPF003191.1E-181663IPR002100Transcription factor, MADS-box
PRINTSPR004048.2E-152944IPR002100Transcription factor, MADS-box
PRINTSPR004048.2E-154465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MNPKKTKGKQ KITIKKIEKD EDRLVTLSKR RNGIYTKLSE LSILCGAEVA FLGYSCSGKP  60
YTFGSPSFQA VAERFLNGES SSSSSSLQRS VMNAHQQAKI QELCKVYNRM VEKAKAEEVK  120
VKKAAALAEK MPLNEDAWWK VDPKEVKDHE EAKKILEKCE GLYEKLCDEA AARIQRGDGE  180
LERDKVLQRL FIHFSRLDWF VGVWSCGVSA SQKPSKPKL*
Cis-element ? help Back to Top
SourceLink
PlantRegMap336095
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0224550.0AC022455.5 Arabidopsis thaliana chromosome 1 BAC T1P2 genomic sequence, complete sequence.
GenBankAY1412440.0AY141244.1 Arabidopsis thaliana MADS-box protein AGL64 mRNA, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020867367.11e-129agamous-like MADS-box protein AGL29
RefseqXP_020867368.11e-129agamous-like MADS-box protein AGL29
TrEMBLD7KEP01e-159D7KEP0_ARALL; Uncharacterized protein
STRINGfgenesh1_pg.C_scaffold_10026601e-160(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46761352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29962.13e-82AGAMOUS-like 64