PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 33640
Organism
Ostreococcus lucimarinus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family HB-other
Protein Properties Length: 154aa    MW: 17674.2 Da    PI: 11.2746
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
33640genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox15.14e-05911242255
               SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
  Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRake 55 
               ++ p++ee+++LA+++g +e  + ++F N Ra+ 
     33640  91 HPFPTREEKRRLAREIGSSEFAIGNFFINARARF 124
               688*****************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500719.4164127IPR001356Homeobox domain
SMARTSM003890.001466131IPR001356Homeobox domain
CDDcd000861.48E-567123No hitNo description
SuperFamilySSF466891.63E-1267130IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.3E-1670129IPR009057Homeodomain-like
PfamPF059207.1E-1384123IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MRDDALAAYE RRLDDVERRF ETLRAKMELT LPSGITKCAR SGIRAAFASA RLRAEKARAV  60
ASRDAEPRRR RLGSKEGQRV LRSWILAHFD HPFPTREEKR RLAREIGSSE FAIGNFFINA  120
RARFHKPLVM ALADELEREG VDVLNARDEE RVR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0005890.0CP000589.1 Ostreococcus lucimarinus CCE9901 chromosome 9, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001419838.11e-104predicted protein
TrEMBLA4S3141e-103A4S314_OSTLU; Uncharacterized protein
STRINGABO981311e-103(Ostreococcus 'lucimarinus')
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP321077
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41410.12e-13TALE family protein