PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 336488
Common NameARALYDRAFT_336488
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB_related
Protein Properties Length: 162aa    MW: 18236.7 Da    PI: 8.619
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
336488genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.11.3e-101442129
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIar 29
                     +g+WT+eEd +lv +++++G+g+W++++ 
           336488 14 KGPWTPEEDIILVSYIQEHGPGNWRSVPT 42
                     79************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-12543IPR009057Homeodomain-like
SuperFamilySSF466894.24E-9843IPR009057Homeodomain-like
PROSITE profilePS5129410.622957IPR017930Myb domain
PfamPF002496.3E-91442IPR001005SANT/Myb domain
CDDcd001671.02E-61640No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MGRPPCCEKI GVKKGPWTPE EDIILVSYIQ EHGPGNWRSV PTNTVLIGLL QIIPTNAGVR  60
IDTLRGFLVV FMIYFVLLVC EVKFRRNQAL IYYCVGNFSH LFGVFAADML VSLIFPIFAL  120
VIATLYLFWF FFVMYRSFAK NMPPKVDQSG TANPVDQLPP V*
Cis-element ? help Back to Top
SourceLink
PlantRegMap336488
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0154693e-60AB015469.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone: K19B1.
GenBankAF1760013e-60AF176001.1 Arabidopsis thaliana putative transcription factor (MYB96) mRNA, complete cds.
GenBankAK2289773e-60AK228977.1 Arabidopsis thaliana mRNA for MYB96 transcription factor-like protein, complete cds, clone: RAFL16-28-G04.
GenBankAY5196453e-60AY519645.1 Arabidopsis thaliana MYB transcription factor (At5g62470) mRNA, complete cds.
GenBankBT0248883e-60BT024888.1 Arabidopsis thaliana At5g62470 mRNA, complete cds.
GenBankCP0026883e-60CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023644422.14e-42uncharacterized protein LOC111832350
TrEMBLD7KK401e-114D7KK40_ARALL; Uncharacterized protein
STRINGfgenesh1_pg.C_scaffold_10030531e-115(Arabidopsis lyrata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08810.11e-28myb domain protein 60