PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 338390
Common NameARALYDRAFT_338390
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family M-type_MADS
Protein Properties Length: 214aa    MW: 24115.9 Da    PI: 6.222
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
338390genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF34.13.5e-1126631350
            HHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
  SRF-TF 13 fskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
            f +R  g  KKA ELSvLC+  v  i +++++ l+ ++
  338390 26 FKQRFPGFKKKATELSVLCGNSVGFICYGPDNDLHVWP 63
            777888999****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554556.41E-141998IPR002100Transcription factor, MADS-box
CDDcd002661.57E-191994No hitNo description
PROSITE profilePS5006611.0591966IPR002100Transcription factor, MADS-box
PfamPF003194.0E-101962IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MAPRDKKPNK SCDDDDLQRK KKQNFFKQRF PGFKKKATEL SVLCGNSVGF ICYGPDNDLH  60
VWPQPQDHNP QTLTQIVAKF NALSDHKRKH HACDLYDFPN LKGLSGDQLR NHLVNLDSHL  120
VGVKQHKINS SLLDPFTLGF SGHDYFLADS MAVTDNWEVC ANNGVWDPSW LDFDFSSTLF  180
TDDWTVSGYN PLLAATDSFT YETPVTDNLG SVF*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap338390
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020890320.11e-103agamous-like MADS-box protein AGL49
SwissprotQ9ZUI95e-66AGL49_ARATH; Agamous-like MADS-box protein AGL49
TrEMBLD7KXQ51e-156D7KXQ5_ARALL; Uncharacterized protein
STRINGfgenesh1_pg.C_scaffold_20004891e-157(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM11232928
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G60040.16e-59AGAMOUS-like 49
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]