PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 338870
Common NameARALYDRAFT_338870
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family WRKY
Protein Properties Length: 235aa    MW: 26548 Da    PI: 4.902
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
338870genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY733.8e-2386146259
             --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
    WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
             +Dg++WrKYGqK++k s++ r YYrCt+a   +C+++k+v++ +++p v  +tY g+H ++
  338870  86 NDGFAWRKYGQKTIKTSPHQRCYYRCTYAkdqNCNATKRVQKIKDNPPVYRTTYMGKHVCT 146
             7***************************99999*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081120.26680143IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.4E-2480146IPR003657WRKY domain
SuperFamilySSF1182901.96E-2282146IPR003657WRKY domain
SMARTSM007742.1E-3385147IPR003657WRKY domain
PfamPF031064.1E-2386145IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MVSNIDHKAM EALLRGQGCA NSLKILLENG EISSVSTEPL INTILDSFSL ALSFVDSPNP  60
PPYYEKLCGA QGLVNYRDDS PIPCPNDGFA WRKYGQKTIK TSPHQRCYYR CTYAKDQNCN  120
ATKRVQKIKD NPPVYRTTYM GKHVCTASVG HDDTHSSKMI QFDQVVSELV MPQLTTIDHQ  180
VITMEDKVTH YIMNQECDID INDYLVGYDQ IWVNEFPPFP SDDTMFLDNI AAFD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A4e-1786145968OsWRKY45
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap338870
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4211541e-126AF421154.1 Arabidopsis thaliana WRKY transcription factor 67 (WRKY67) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020865923.11e-167probable WRKY transcription factor 67
SwissprotQ93WV71e-134WRK67_ARATH; Probable WRKY transcription factor 67
TrEMBLD7KTR81e-177D7KTR8_ARALL; Uncharacterized protein
STRINGfgenesh1_pg.C_scaffold_20009691e-177(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56091847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66550.21e-138WRKY DNA-binding protein 67