PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 338960
Common NameARALYDRAFT_338960
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family TCP
Protein Properties Length: 345aa    MW: 38863.9 Da    PI: 4.7314
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
338960genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP133.22.4e-41822242125
     TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...ssssa..sec....eaesssssasnsssg....... 88 
              +kkdrhskihT++g+RdRRvRls+ +a++fFdLqd+LGfdk+skt+eWLl+++ +aike ++    +   +  +++     ++++++++++   +       
  338960  82 VVKKDRHSKIHTAQGLRDRRVRLSIGIARQFFDLQDMLGFDKASKTLEWLLNKSRKAIKEVVQEknlN---NddEDFgnngGDVEEEEEEEE---Dgdksfly 178
             589*************************************************************5552...422122332322222222222...13346677 PP

     TCP  89 ........kaaksaakskksqksaasalnlak.esrakarararer 125
                     ++   + k+ +++k++++++n++   srakar +a+e 
  338960 179 gsspdscgEKLVCEVKKAEKRKKKSEVSNMSSeGSRAKARGKAKEM 224
             8888778777777777777777777788888878889999988874 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036348.3E-4084225IPR005333Transcription factor, TCP
PROSITE profilePS5136935.70484142IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MSSSNNDGNN NGAYPLSLYL SSLSGHQDII HNPYNHQLKA SPGHMVSAVP ESLIDYMAFN  60
SNNVVNHQGF EFPEVSKEIK KVVKKDRHSK IHTAQGLRDR RVRLSIGIAR QFFDLQDMLG  120
FDKASKTLEW LLNKSRKAIK EVVQEKNLNN DDEDFGNNGG DVEEEEEEEE DGDKSFLYGS  180
SPDSCGEKLV CEVKKAEKRK KKSEVSNMSS EGSRAKARGK AKEMAYDHPE TVSDITQSEI  240
MDPFNRSIIF NEGEGMTHSF YNEAIEEFDI QESILTTRRF NLPANMGESY NQCNGTFMLI  300
DQGSTSNYNA IDLPQILDYN YDQNPFVDQS FCAVTDTNFP RGFP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-1489142154Putative transcription factor PCF6
5zkt_B2e-1489142154Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in petal morphogenesis. {ECO:0000269|PubMed:17940055}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00215DAPTransfer from AT1G67260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap338960
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0021300.0AC002130.2 Genomic sequence for Arabidopsis thaliana BAC F1N21 from chromosome I, complete sequence.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002888583.10.0transcription factor TCP1
SwissprotQ9FYG71e-176TCP1_ARATH; Transcription factor TCP1
TrEMBLD7KV110.0D7KV11_ARALL; Uncharacterized protein
STRINGfgenesh1_pg.C_scaffold_20010590.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67332744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67260.21e-142TCP family protein
Publications ? help Back to Top
  1. Mazur MJ, et al.
    Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci.
    Front Plant Sci, 2017. 8: p. 2043
    [PMID:29250092]