PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 339154
Common NameARALYDRAFT_339154
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family SBP
Protein Properties Length: 410aa    MW: 46242.2 Da    PI: 6.8703
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
339154genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP135.41.8e-42129204277
             -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
     SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
             Cqv gC++dls+ k+yh+rh+vCe+hsk++vv+v+gleqrfCqqCsrfh lsefD++krsCrrrLa+hnerrrk++
  339154 129 CQVYGCNMDLSSSKDYHKRHRVCEAHSKTSVVVVNGLEQRFCQQCSRFHFLSEFDDGKRSCRRRLAGHNERRRKPA 204
             **************************************************************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.106.5E-34124190IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.958126203IPR004333Transcription factor, SBP-box
SuperFamilySSF1036124.84E-40127206IPR004333Transcription factor, SBP-box
PfamPF031101.8E-32129202IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010468Biological Processregulation of gene expression
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MDDSWSYGRS VFMSNETLLP FDSFAENRRF EHRFSNELRN DNDDVLISDM AGNSNGFSAV  60
SITKVVPEEE EEENQSSSSK LSSHELNRID FKLRSILDLG NDDDTSSRGF ALPAKKSRAS  120
NLCSQNPLCQ VYGCNMDLSS SKDYHKRHRV CEAHSKTSVV VVNGLEQRFC QQCSRFHFLS  180
EFDDGKRSCR RRLAGHNERR RKPAFYFLPG KRHKLLRTSQ GVVGNKFLEN PSLVLPESFP  240
GSLLYRVIDD DDHRASRLVS FKDEPTCSMF PAIGQNSSRT YESKPAIYSA EVSSIWDLHE  300
TAVSRSTCAL SLLSAQSQQH LSQIPNTTFS ITQPNQNPNH PSQVDYHEME PLWIDPGKTN  360
SAGSSSCKGK GPSTVDLLQL SSHLQRIEQQ RNYTGDVKQE YNELYFPGS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-301282021084squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap339154
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156 and miR157. {ECO:0000305|PubMed:12202040}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ0116430.0AJ011643.1 Arabidopsis thaliana (ecotype Columbia) mRNA for squamosa promoter binding protein-like 6.
GenBankAK2279640.0AK227964.1 Arabidopsis thaliana mRNA for squamosa promoter binding protein-like 6, complete cds, clone: RAFL14-51-E10.
GenBankBT0064360.0BT006436.1 Arabidopsis thaliana At1g69170 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002887224.10.0squamosa promoter-binding-like protein 6
RefseqXP_020891547.10.0squamosa promoter-binding-like protein 6
SwissprotQ94JW80.0SPL6_ARATH; Squamosa promoter-binding-like protein 6
TrEMBLD7KWY90.0D7KWY9_ARALL; Uncharacterized protein
STRINGfgenesh1_pg.C_scaffold_20012530.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM92752435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69170.10.0SBP family protein
Publications ? help Back to Top
  1. Jorgensen SA,Preston JC
    Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis.
    Mol. Phylogenet. Evol., 2014. 73: p. 129-39
    [PMID:24508602]
  2. Xu M, et al.
    Developmental Functions of miR156-Regulated SQUAMOSA PROMOTER BINDING PROTEIN-LIKE (SPL) Genes in Arabidopsis thaliana.
    PLoS Genet., 2016. 12(8): p. e1006263
    [PMID:27541584]