PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 34044
Organism
Ostreococcus lucimarinus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family AP2
Protein Properties Length: 197aa    MW: 22289.1 Da    PI: 10.3154
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
34044genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.11.6e-11872155
    AP2  1 sgykGVrwdkkrgrWvAeIrd.pse..ng.....kr..krfslgkfgtaeeAakaaiaarkkleg 55
           s+ kGV+++k + rW+A+++d  +e  ++     ++  ++++lg + ++ +Aa+a++ a+++++g
  34044  8 SKWKGVTRHKITSRWEAHLWDaTYErvRKkssggRTrgRQVYLGGWISELDAARAYDLAALRFFG 72
           5679*****************99999955677773357**********99***********9987 PP
2AP232.52.1e-10116168254
    AP2   2 gykGVrwdkkrgr...WvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 
             y+GV+ +k +++   W+A+I  +     +k+ +lg++ t+  Aa+a++ a++ ++
  34044 116 AYRGVTSHKGKNSkgkWEARIGRVMG---NKYLYLGTYPTERAAAEAYDCAALLYR 168
            5999988875555666****988533...4**********99*******9998776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.64E-11882IPR016177DNA-binding domain
CDDcd000181.90E-12882No hitNo description
PfamPF008472.0E-5970IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.8E-11981IPR001471AP2/ERF domain
PROSITE profilePS5103215.975980IPR001471AP2/ERF domain
SMARTSM003804.4E-17986IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-14115179IPR016177DNA-binding domain
PROSITE profilePS5103216.45116177IPR001471AP2/ERF domain
PfamPF008471.1E-6116165IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.6E-15116178IPR001471AP2/ERF domain
SMARTSM003802.4E-21116183IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0040019Biological Processpositive regulation of embryonic development
GO:0048364Biological Processroot development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MKSTNRSSKW KGVTRHKITS RWEAHLWDAT YERVRKKSSG GRTRGRQVYL GGWISELDAA  60
RAYDLAALRF FGTRQVLNFD VSNYTEEIKA MQEYSPADWV CELRRRSSGF SRGVSAYRGV  120
TSHKGKNSKG KWEARIGRVM GNKYLYLGTY PTERAAAEAY DCAALLYRDS KAVTNFDRSN  180
YSEEEIANAG LGAKIL*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0005830.0CP000583.1 Ostreococcus lucimarinus CCE9901 chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001416638.11e-143predicted protein
SwissprotQ6PQQ33e-56AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLA4RUA21e-141A4RUA2_OSTLU; Uncharacterized protein
STRINGABO949311e-142(Ostreococcus 'lucimarinus')
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP561657
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.32e-34AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Molitor AM,Bu Z,Yu Y,Shen WH
    Arabidopsis AL PHD-PRC1 complexes promote seed germination through H3K4me3-to-H3K27me3 chromatin state switch in repression of seed developmental genes.
    PLoS Genet., 2014. 10(1): p. e1004091
    [PMID:24465219]
  3. Feng J,Chen D,Berr A,Shen WH
    ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development.
    Plant Physiol., 2016. 172(3): p. 1746-1759
    [PMID:27630184]
  4. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  5. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]