PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 341076
Common NameARALYDRAFT_317739
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB
Protein Properties Length: 1246aa    MW: 140467 Da    PI: 5.5785
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
341076genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.49e-15686732148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT+ Ede l +av  + g++Wk Ia+ ++  Rt+ qc +rwqk+l
           341076 686 KGGWTPAEDETLRRAVGTYKGKSWKNIAKFFP-DRTEVQCLHRWQKVL 732
                      688*****************************.************986 PP
2Myb_DNA-binding61.51.8e-19738784148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WT+eEde++v++v+++G+  W+ Ia+ ++ gR +kqc++rw+++l
           341076 738 KGPWTQEEDEKIVELVEKYGPAKWSVIAQSLP-GRIGKQCRERWHNHL 784
                      79******************************.*************97 PP
3Myb_DNA-binding51.91.8e-16790833146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +++WT eE+  l +a++ +G++ W+ Ia+ ++ gRt++ +k++w++
           341076 790 KDAWTSEEEVALMNAHRSHGNK-WAEIAKVLP-GRTDNAIKNHWNS 833
                      679*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PRINTSPR006856.3E-61636IPR000812Transcription factor TFIIB
Gene3DG3DSA:1.10.472.102.7E-1965163IPR013763Cyclin-like
SuperFamilySSF479546.8E-2075164IPR013763Cyclin-like
SMARTSM003850.005576160IPR013763Cyclin-like
PfamPF003825.3E-1182151IPR013150Transcription factor TFIIB, cyclin-like domain
CDDcd000437.74E-793159No hitNo description
PRINTSPR006856.3E-6121140IPR000812Transcription factor TFIIB
SuperFamilySSF479541.41E-21173261IPR013763Cyclin-like
Gene3DG3DSA:1.10.472.101.5E-21175267IPR013763Cyclin-like
CDDcd000436.31E-6175251No hitNo description
SMARTSM003850.039178262IPR013763Cyclin-like
PfamPF003827.0E-10194253IPR013150Transcription factor TFIIB, cyclin-like domain
PRINTSPR006856.3E-6216232IPR000812Transcription factor TFIIB
Gene3DG3DSA:1.20.5.6501.5E-10420469No hitNo description
PfamPF077411.4E-25430552IPR011665Brf1, TBP-binding domain
PROSITE profilePS5129415.284681732IPR017930Myb domain
SMARTSM007179.1E-14685734IPR001005SANT/Myb domain
PfamPF002491.7E-13686732IPR001005SANT/Myb domain
SuperFamilySSF466898.61E-15687742IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.8E-20688742IPR009057Homeodomain-like
CDDcd001671.69E-11689732No hitNo description
PROSITE profilePS5129431.851733788IPR017930Myb domain
SuperFamilySSF466898.8E-32735831IPR009057Homeodomain-like
SMARTSM007172.4E-18737786IPR001005SANT/Myb domain
PfamPF002493.7E-18738784IPR001005SANT/Myb domain
CDDcd001674.40E-15740784No hitNo description
Gene3DG3DSA:1.10.10.601.8E-27743791IPR009057Homeodomain-like
PROSITE profilePS5129421.707789839IPR017930Myb domain
SMARTSM007171.5E-15789837IPR001005SANT/Myb domain
PfamPF002491.4E-14790833IPR001005SANT/Myb domain
CDDcd001675.23E-11792835No hitNo description
Gene3DG3DSA:1.10.10.601.7E-22792838IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006352Biological ProcessDNA-templated transcription, initiation
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0017025Molecular FunctionTBP-class protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1246 aa     Download sequence    Send to blast
MVWCNHCVKN VPGIRPYDGA LACNLCGRIL ENFNFSTEVT FVKNAAGQSQ ASGNIVSSVQ  60
SGIPSSRERR YRIARDEFTN LRDALGIGDE RADVIDMAVL FFKSAVEQNF TKGRRTELVQ  120
ASCLYLTCRE LNVPFLLIDF SSYLRVSVYE LGSVYLQLCE MLYIADNQNY EKLVDPSIFI  180
DRFSNILLKG THNKAVVKTA IAIIASMKRD WIQTGRKPSG ICGAALYTAA LSHGIKCSKS  240
DIVNIVHICE ATLTKRLIEF GNTESGNLNV DEITERESHK RSSTMKPTSN KEAVLCMHQD  300
SKPFGYGLCK DCYEDFINVS GGLVGGSDPP AFQRAENERM EKAAREENEG GISSLNHDEQ  360
LYDLILKISC AELLTVRLLQ YEQKRKTIFC SSLSFERLRI YLCCVAEKGE RNKDGDEEHA  420
DTSDESDNFS DISDDEVDGY INNEEETHYK TITWTEMNKD YLEEQAAKEA ALKAASEALK  480
ASNSNCPEDA RKAFEAAKAD AAKSRKEKQQ KKAEEAKNAA PPATAMEAVR RTLEKKRLSL  540
VINYDVLEEL FDTSSNEHEK GENEDEAEED EEEGSVESYD MNTDFQNGEK FYEEDEGEEE  600
DVKCVGPDDF TCSMVLQMDL QEEAGEVKVE DQCVENKQST PASCSSVSEG SAGSSHKSPT  660
IASPPATVSP THRYLGRTSG PIRRAKGGWT PAEDETLRRA VGTYKGKSWK NIAKFFPDRT  720
EVQCLHRWQK VLNPDLIKGP WTQEEDEKIV ELVEKYGPAK WSVIAQSLPG RIGKQCRERW  780
HNHLNPDINK DAWTSEEEVA LMNAHRSHGN KWAEIAKVLP GRTDNAIKNH WNSSLKKKSE  840
FYSMTGRLPP PTTAKNGVPD SVTKRSSSSQ KRVFGSVTQT SSGTTDKNNP DEDRNGQINS  900
TVPVEEVVAA SRMTGVNEYA RSPQLPNPEP LPENGGAANN GYHLYYTPQI EYYMASEVDT  960
QRMYGYECGC SPSASPVSFF TPPPCRNAYS NGSTPRSPES YLREAARTYP NTPSIFRKRR  1020
PRVVVEDNNN AEKTDEAKEV DQKVNDGKDS SESPNCEEIQ KNGSNAYNLS PPYRIRSKRT  1080
AVFKSRQLEF ISAEEEKADD ETKSSEKDML IDGDSQLLIP SEEIYGGSEY KIVEYERTVY  1140
VRFEAKNVTY KLHKGRWRKA DLAIMNHGLN LPYLYHFVIE NVFYRYNKRR IDWYDSKERS  1200
WTTLKGLERL PSTLSRSNRL KLAIMVEKWY FCGKSMCLLT TIKRR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C3e-666858385158MYB PROTO-ONCOGENE PROTEIN
1h89_C3e-666858385158MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap341076
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1426490.0AY142649.1 Arabidopsis thaliana putative MYB family transcription factor (At3g09370) mRNA, complete cds.
GenBankAY5196510.0AY519651.1 Arabidopsis thaliana MYB transcription factor (At3g09370) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLD7L7U30.0D7L7U3_ARALL; Uncharacterized protein
STRINGfgenesh1_pg.C_scaffold_30008390.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM279022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09370.20.0myb domain protein 3r-3