PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 341194
Common NameARALYDRAFT_341194
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB_related
Protein Properties Length: 286aa    MW: 32496.2 Da    PI: 6.1782
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
341194genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.91.3e-1494138347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +W++ E++l++d+ +++G+g+Wk+Iar+  k+R++ q+ s+ qky
           341194  94 AWSPNEHKLFLDGLNKYGKGDWKSIARECVKTRSPMQVASHAQKY 138
                      6*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.3354IPR001005SANT/Myb domain
SuperFamilySSF466891.94E-6660IPR009057Homeodomain-like
PROSITE profilePS5129414.21587143IPR017930Myb domain
SuperFamilySSF466892.62E-1688144IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.2E-1089146IPR009057Homeodomain-like
TIGRFAMsTIGR015575.3E-1590142IPR006447Myb domain, plants
SMARTSM007171.9E-891141IPR001005SANT/Myb domain
PfamPF002492.2E-1194138IPR001005SANT/Myb domain
CDDcd001672.67E-1094139No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MDEIPLWTRV DDKRFESALV QFPEGSPYFL ENIAQFLQKP LKDVKYYYQA LVDDVALIES  60
GNFALPNYRD DDYVSLKEAT KSKNQGTGKK KGIAWSPNEH KLFLDGLNKY GKGDWKSIAR  120
ECVKTRSPMQ VASHAQKYFL RKNKKGKRMS IHDMPLGDAD NVTVPVSHLN STGQQPQFGD  180
QILPDHYYHC SQDNVTNIPG SNLVFMGQQP HFGGQIPPNQ SHPYSRDNVT VPESNLKPMG  240
EQPHFGDHIS PDQYDRDFLD NFGFFYDDGE DDGSLASFEK LYYKA*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00344DAPTransfer from AT3G10580Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap341194
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0115601e-157AC011560.6 Arabidopsis thaliana chromosome 3 BAC F13M14 genomic sequence, complete sequence.
GenBankATAC0134281e-157AC013428.6 Arabidopsis thaliana chromosome III BAC F18K10 genomic sequence, complete sequence.
GenBankCP0026861e-157CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002884799.10.0transcription factor DIVARICATA
SwissprotQ9FNN68e-34SRM1_ARATH; Transcription factor SRM1
TrEMBLD7L9110.0D7L911_ARALL; Uncharacterized protein
STRINGfgenesh1_pg.C_scaffold_30009570.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14731719
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10580.11e-141MYB_related family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]