PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

341554

Common Name

ARALYDRAFT_341554

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

Trihelix

Protein Properties

Length: 230aa MW: 25634.3 Da PI: 8.8273

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
341554	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	34	7.5e-11	53	122	2	70
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekk 70 W+++ + Li+a e+ +l+rg+lk+++W+ev++ + r+ + ++ + Ck++++ ++k++k +k+ 341554 53 WSEEATEILINAWGERYLELKRGNLKQQHWKEVAEIVnRDNKSPKTDIHCKNRIDTVKKKFKLEKAKIAA 122 ***********************************788899*****************99987655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	2.6E-18	51	120	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence Send to blast
MEEDDETQSR PSPTDTSTAK SPGRSGLALV VSCPNQAASG RRSGGGGGRD DSWSEEATEI 60 LINAWGERYL ELKRGNLKQQ HWKEVAEIVN RDNKSPKTDI HCKNRIDTVK KKFKLEKAKI 120 AAGKELLLRR SQSLNLNFLL TLPLPPLLLP TPVTLDKTGG GGGREVGEVA MAIVGFAESY 180 EKVETLKLKQ MVELEKEKMK FSKELELQRI HFFKAQLEML RNCLEDRDS*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269\|PubMed:21330492}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	341554

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013727919.1	2e-47	trihelix transcription factor ASIL1-like
Swissprot	Q9LJG8	3e-35	ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBL	D7L2D5	1e-167	D7L2D5_ARALL; Uncharacterized protein
STRING	fgenesh1_pg.C_scaffold_3001317	1e-168	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6262	25	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G54060.1	2e-26	6B-interacting protein 1-like 1

Link Out ? help Back to Top
Phytozome	341554
Entrez Gene	9318938