PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 343166
Common NameARALYDRAFT_343166
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family G2-like
Protein Properties Length: 159aa    MW: 17615 Da    PI: 10.3596
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
343166genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like48.12.5e-1544772556
  G2-like 25 ekAtPktilelmkv..kgLtlehvkSHLQkYRla 56
              +AtPk+i++lmkv  +gLt+++vkSHLQkYRl+
   343166 44 AVATPKQIRDLMKVkvDGLTNDEVKSHLQKYRLH 77
             579*********85227***************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.565.102.2E-12245IPR003594Histidine kinase-like ATPase, C-terminal domain
SuperFamilySSF558741.81E-7345IPR003594Histidine kinase-like ATPase, C-terminal domain
SuperFamilySSF466891.47E-54480IPR009057Homeodomain-like
TIGRFAMsTIGR015576.6E-124477IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.602.9E-134680IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MIRFESLTDK SKLDGQPELF LHIIPDKTNN TLNIIDSGIG MTKAVATPKQ IRDLMKVKVD  60
GLTNDEVKSH LQKYRLHTRR PATPVVTNGG ENPQQLQFMV VEGIWVLSHD TTNNRVYALV  120
AVQSSPSGER SRRRCKSPTT SSTHTTPSSS IIDSSRFV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4x9l_A2e-1824481123Heat shock protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phosphate signaling in roots. {ECO:0000250|UniProtKB:Q9FX67}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap343166
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002885980.11e-114transcription factor HHO3
SwissprotQ9FPE81e-46HHO3_ARATH; Transcription factor HHO3
TrEMBLD7L4G31e-113D7L4G3_ARALL; Uncharacterized protein
STRINGfgenesh1_pg.C_scaffold_30029291e-114(Arabidopsis lyrata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25550.11e-48G2-like family protein
Publications ? help Back to Top
  1. Nagarajan VK,Satheesh V,Poling MD,Raghothama KG,Jain A
    Arabidopsis MYB-Related HHO2 Exerts a Regulatory Influence on a Subset of Root Traits and Genes Governing Phosphate Homeostasis.
    Plant Cell Physiol., 2016. 57(6): p. 1142-52
    [PMID:27016098]