PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 343397
Common NameARALYDRAFT_343397
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bZIP
Protein Properties Length: 227aa    MW: 25031.9 Da    PI: 6.2416
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
343397genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_141.43.2e-13120177459
             XCHHHCHHHHHHHHHHHHHHHHH..HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  bZIP_1   4 lkrerrkqkNReAArrsRqRKka..eieeLeekvkeLeaeNkaLkkeleelkkevakl 59 
             ++r +r++kNRe+A rsR+RK++  ++ eLe +++ L++eN +Lk + ++ +  +++l
  343397 120 DRRYKRMIKNRESAARSRARKQEcaYTNELELEIAHLQTENARLKIQQDQTSSSSSQL 177
             7899******************5559*******************9988887777666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1702.1E-12111177No hitNo description
SMARTSM003381.7E-11117183IPR004827Basic-leucine zipper domain
PfamPF001702.5E-11120177IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.78E-10121179No hitNo description
CDDcd147072.23E-23121164No hitNo description
PROSITE patternPS000360124139IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:2000028Biological Processregulation of photoperiodism, flowering
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0043621Molecular Functionprotein self-association
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MEEVWKEINN GSLHYHRQLN IGHEPMLKNQ NPNNSTFQDF LNMPLNQQPP STSSIVTALY  60
GSLPLPPPAT VLSLNSGVGF EFLDTTETLA ASNPHSFEES ARVGCLGKKR SQDPDESRGD  120
RRYKRMIKNR ESAARSRARK QECAYTNELE LEIAHLQTEN ARLKIQQDQT SSSSSQLISA  180
LFVGEMTESK VVVPDVCDGY SISASTPSMS NVGQVSSFNQ HLSVCV*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for the transition to flowering promoted by FT. {ECO:0000269|PubMed:23543784}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap343397
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ1771370.0GQ177137.1 Arabidopsis thaliana ecotype Ws-0 FDP gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020889546.11e-125bZIP transcription factor 27 isoform X2
SwissprotQ7PCC61e-104FDP_ARATH; bZIP transcription factor 27
TrEMBLD7LAA91e-168D7LAA9_ARALL; Uncharacterized protein
STRINGfgenesh1_pg.C_scaffold_30031601e-168(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19342772
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17770.21e-103basic region/leucine zipper motif 27
Publications ? help Back to Top
  1. Jang S,Li HY,Kuo ML
    Ectopic expression of Arabidopsis FD and FD PARALOGUE in rice results in dwarfism with size reduction of spikelets.
    Sci Rep, 2017. 7: p. 44477
    [PMID:28290557]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]