PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 343486
Common NameARALYDRAFT_343486
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family HD-ZIP
Protein Properties Length: 221aa    MW: 25513.5 Da    PI: 5.0845
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
343486genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.51.2e-1862115457
               -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
  Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
               ++++++eq++ Le  Fe ++++  e++ +LA++lgL+ rqV vWFqNrRa+ k+
    343486  62 KRKLSDEQVRMLEISFEDDQKLESERKDRLASELGLDPRQVAVWFQNRRARFKN 115
               45899**********************************************995 PP
2HD-ZIP_I/II117.67.1e-3861152293
  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                  +kr+ls+eqv++LE sFe ++kLe+erK +la+eLgl+prqvavWFqnrRAR+k+k++E +y+++k+ay++ + e++rL++ev +L+e+l e
       343486  61 RKRKLSDEQVRMLEISFEDDQKLESERKDRLASELGLDPRQVAVWFQNRRARFKNKRVEDEYTKIKNAYETTVVEKCRLDSEVLHLKEQLYE 152
                  8***************************************************************************************9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.5E-1753118IPR009057Homeodomain-like
PROSITE profilePS5007116.97356116IPR001356Homeobox domain
SMARTSM003897.9E-1959120IPR001356Homeobox domain
CDDcd000869.14E-1661117No hitNo description
PfamPF000465.6E-1662114IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.7E-1963122IPR009057Homeodomain-like
PRINTSPR000311.4E-58796IPR000047Helix-turn-helix motif
PROSITE patternPS00027091114IPR017970Homeobox, conserved site
PRINTSPR000311.4E-596112IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MNNQNVDDHN LLLISQLYPN VYTPLVPQQA GEAKPARRRK RKSKSVAMAE EGGAGGNGWF  60
RKRKLSDEQV RMLEISFEDD QKLESERKDR LASELGLDPR QVAVWFQNRR ARFKNKRVED  120
EYTKIKNAYE TTVVEKCRLD SEVLHLKEQL YEAEREIQRL AQRVEGTLSN SPISSFVTIE  180
ANHTTPFFGD YDIGFDGEGD ENLLYSPDYI DGLEWMSQFM *
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap343486
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0313620.0BT031362.1 Arabidopsis thaliana unknown protein (At2g18550) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002886182.21e-165homeobox-leucine zipper protein ATHB-21 isoform X1
SwissprotQ9ZU701e-153ATB21_ARATH; Homeobox-leucine zipper protein ATHB-21
TrEMBLD7L0841e-163D7L084_ARALL; ATHB21/HB-2
STRINGfgenesh1_pg.C_scaffold_30032491e-164(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22082677
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18550.11e-137homeobox protein 21
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]