PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 34350
Organism
Selaginella moellendorffii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family C2H2
Protein Properties Length: 253aa    MW: 29859.2 Da    PI: 9.075
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
34350genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.40.00011524120
             EEETTTTEEESSHHHHHHHH CS
  zf-C2H2  1 ykCpdCgksFsrksnLkrHi 20
             y+C  Cgk    +s+L++H+
    34350  5 YECRECGKKLGKPSLLRQHL 24
             99*****************7 PP
2zf-C2H210.80.00163358123
             EEET..TTTEEESSHHHHHHHHHH.T CS
  zf-C2H2  1 ykCp..dCgksFsrksnLkrHirt.H 23
             + Cp   Cg  ++   +LkrHi+  H
    34350 33 FCCPvdSCGAKYKWENHLKRHINDkH 58
             679999****************9766 PP
3zf-C2H215.93.7e-05107132123
              EEET..TTTEEESSHHHHHHHHHH.T CS
  zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
              + C+  +Cgk F+ +s+L+ H  t H
    34350 107 HACKeeKCGKAFRYPSQLRYHEETcH 132
              579999***************99955 PP
4zf-C2H215.45.4e-05140164223
              EET..TTTEEESSHHHHHHHHHH.T CS
  zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
              +C+   C+++F ++s+L  H r+ H
    34350 140 VCSepGCNERFDHPSDLSEHTRNaH 164
              688889****************988 PP
5zf-C2H212.50.00046200224223
              EET..TTTEEESSHHHHHHHHHH.T CS
  zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
              kCp  dC+ ++ +  nL++Hi++ H
    34350 200 KCPypDCPLTYLQENNLRKHIKVaH 224
              79999*****************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.606.9E-6225IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.4E-8354No hitNo description
SMARTSM003550.13527IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.57532IPR007087Zinc finger, C2H2
PROSITE patternPS000280727IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.3E-72655IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0313358IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.7433368IPR007087Zinc finger, C2H2
PROSITE patternPS0002803558IPR007087Zinc finger, C2H2
SMARTSM003556.96387IPR015880Zinc finger, C2H2-like
SuperFamilySSF576674.04E-5104134No hitNo description
Gene3DG3DSA:3.30.160.601.1E-5105134IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.263107132IPR007087Zinc finger, C2H2
SMARTSM003553.2107132IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280109132IPR007087Zinc finger, C2H2
SMARTSM003550.023139164IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.016139164IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.4E-5140164IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280141164IPR007087Zinc finger, C2H2
SMARTSM0035519167188IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.3E-5178222IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.61E-6179241No hitNo description
SMARTSM003550.037199224IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.681199229IPR007087Zinc finger, C2H2
PROSITE patternPS000280201224IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.6E-4224252IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM00355180230252IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.827230253IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008097Molecular Function5S rRNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0080084Molecular Function5S rDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
EEKKYECREC GKKLGKPSLL RQHLLCHSNE RKFCCPVDSC GAKYKWENHL KRHINDKHDG  60
KVHACSRPGC IFTTRILHDL KRHTKLHEKK GTLQRHRDKG LEEAKEHACK EEKCGKAFRY  120
PSQLRYHEET CHGEIYVDIV CSEPGCNERF DHPSDLSEHT RNAHKYVFCE VCGKQCMRSK  180
IKRHYATHDK AGLLNRERIK CPYPDCPLTY LQENNLRKHI KVAHLKFRPY PCSNPECGKS  240
FAYRHVRDNH ERS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00229DAPTransfer from AT1G72050Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9241841e-175Selaginella moellendorffii transcription factor IIIA gene, complete cds
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024523610.10.0transcription factor IIIA
TrEMBLB6DCI80.0B6DCI8_SELML; Transcription factor IIIA
STRINGEFJ196610.0(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP29811627
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.21e-33transcription factor IIIA
Publications ? help Back to Top
  1. Fu Y, et al.
    Alternative splicing of anciently exonized 5S rRNA regulates plant transcription factor TFIIIA.
    Genome Res., 2009. 19(5): p. 913-21
    [PMID:19211543]