PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

346041

Common Name

ARALYDRAFT_346041

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

LBD

Protein Properties

Length: 246aa MW: 27626.4 Da PI: 6.4437

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
346041	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	124.6	5e-39	7	107	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +C aCk+lrr+C+k+Cv+apyf++eq +++fa++h++FGasn +kll++lp e+r++a+++++yeA+ar +dP+yG+v++i++lqq++ +l+++l+ lk++ 346041 7 PCGACKFLRRRCVKGCVFAPYFCHEQgASHFAAIHQVFGASNASKLLSHLPMEDRREAATTIYYEAQARRQDPIYGCVSHIFSLQQHVVNLQTQLEILKQQ 107 7***********************89*******************************************************************9997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	22.328	6	108	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.1E-37	7	105	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence Send to blast
MTGSGSPCGA CKFLRRRCVK GCVFAPYFCH EQGASHFAAI HQVFGASNAS KLLSHLPMED 60 RREAATTIYY EAQARRQDPI YGCVSHIFSL QQHVVNLQTQ LEILKQQAKQ SMMATDSPSI 120 ENPNYYQDTK PQYLQESHDL HHQHHQTTSD YQTEQHCDLK NIMTSCYHQN ETGTRSFIGA 180 GGDTTAASYY YNSSSGYSEE LKSVSTIGEF SKYSEVDQQH LNTFNQYHDG GNDLLSESLG 240 YITYS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-34	3	102	7	105	LOB family transfactor Ramosa2.1
5ly0_B	2e-34	3	102	7	105	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	346041

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin. {ECO:0000269\|PubMed:15659631}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB473848	0.0	AB473848.1 Arabidopsis thaliana ASL15 mRNA for ASYMMETRIC LEAVES2-like 15 protein, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002881844.1	0.0	LOB domain-containing protein 17
Swissprot	Q9SLB6	1e-150	LBD17_ARATH; LOB domain-containing protein 17
TrEMBL	D7LI62	0.0	D7LI62_ARALL; Uncharacterized protein
STRING	fgenesh1_pg.C_scaffold_4002383	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM108	28	359

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42440.1	1e-144	LBD family protein

Link Out ? help Back to Top
Phytozome	346041
Entrez Gene	9316055

Publications ? help Back to Top
Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751]