PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

34663

Common Name

SELMODRAFT_34663

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

bZIP

Protein Properties

Length: 286aa MW: 32076.7 Da PI: 7.7265

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
34663	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.4	9.9e-11	131	189	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 kr++r NR +A rs +RK +i eLe+kv++L++e ++L +l +l+ l++e+ 34663 131 KRAKRILANRQSAARSKERKMRYISELERKVQTLQTEATTLSAQLTMLQRDTTGLTTEN 189 9*********************************************9998887777765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	3.5E-17	127	191	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.139	129	192	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.9E-11	131	183	No hit	No description
Pfam	PF00170	3.2E-9	131	188	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.7E-11	131	185	No hit	No description
CDD	cd14703	1.14E-22	132	181	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 286 aa Download sequence Send to blast
DVNRMPDAPP RPRGHRRAQS EITFCLPDDA SFERELGLQS PAMPALSDEA GEDLFNMYID 60 MEKINSFNVA SATPTKSDGN SNSEPRRPRH HHSNSMDSFK SDFLNSESDS TEAKKALAAS 120 KLAELALIDP KRAKRILANR QSAARSKERK MRYISELERK VQTLQTEATT LSAQLTMLQR 180 DTTGLTTENN ELKLRLTAME QQGQLRDALN DALKEEVQRL KLATGQLTGP GGQQQQLSIN 240 AQYFQMQQLQ QLQQQAQNAI DSQQQQQSQR SPPSQPQQQQ QPGAHP

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor with an activatory role.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00126	DAP	Transfer from AT1G06070	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	-	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024534935.1	1e-168	transcription factor RF2a
Swissprot	Q04088	2e-82	POF21_ARATH; Probable transcription factor PosF21
TrEMBL	D8RTK0	0.0	D8RTK0_SELML; Uncharacterized protein (Fragment)
STRING	EFJ24688	0.0	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP126	17	181

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06070.1	1e-74	bZIP family protein

Link Out ? help Back to Top
Phytozome	34663
Entrez Gene	9658408

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031] Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751]