PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

346639

Common Name

ARALYDRAFT_346639

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

HD-ZIP

Protein Properties

Length: 202aa MW: 22843.8 Da PI: 9.3302

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
346639	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.4	1.2e-18	64	118	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++t+eq + Le+ F++n++++ +++e LAk+l L rq+ vWFqNrRa+ k 346639 64 RKKLRLTREQSRLLEDSFRQNHTLNPKQKEALAKHLMLRPRQIEVWFQNRRARSK 118 78889************************************************98 PP
2	HD-ZIP_I/II	118.7	3.2e-38	64	152	1	89
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 +kk+rl++eq++lLE+sF+++++L+p++K++la++L l+prq++vWFqnrRAR k+kq+E+++e+Lkr++ +l+e+n+rL++eveeLr+ 346639 64 RKKLRLTREQSRLLEDSFRQNHTLNPKQKEALAKHLMLRPRQIEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNHRLHREVEELRA 152 69*************************************************************************************94 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	6.3E-19	45	118	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.45E-18	47	121	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.135	60	120	IPR001356	Homeobox domain
SMART	SM00389	2.4E-17	62	124	IPR001356	Homeobox domain
CDD	cd00086	7.41E-16	63	121	No hit	No description
Pfam	PF00046	6.6E-16	64	118	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	95	118	IPR017970	Homeobox, conserved site
SMART	SM00340	1.1E-21	120	163	IPR003106	Leucine zipper, homeobox-associated
Pfam	PF02183	1.4E-9	120	154	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 202 aa Download sequence Send to blast
MAILPENSSN LDLTISVPGF SSSPPSDEGS GGGRDQLKLD MNRLPSSEDG DDEEFSHDGS 60 APPRKKLRLT REQSRLLEDS FRQNHTLNPK QKEALAKHLM LRPRQIEVWF QNRRARSKLK 120 QTEMECEYLK RWFGSLTEQN HRLHREVEEL RAMKVGPTTV NSASSLTMCP RCERVTTAAS 180 PSRAVVPVPA KKTFPPQERD H*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	112	120	RRARSKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	346639

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ431181	0.0	AJ431181.1 Arabidopsis thaliana mRNA for homeodomain-leucine zipper (Athb17 gene).

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002876750.2	1e-148	LOW QUALITY PROTEIN: homeobox-leucine zipper protein ATHB-17
Swissprot	Q8S9N6	1e-142	ATB17_ARATH; Homeobox-leucine zipper protein ATHB-17
TrEMBL	D7LLR2	1e-146	D7LLR2_ARALL; Uncharacterized protein
STRING	fgenesh1_pg.C_scaffold_5000031	1e-147	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4890	27	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01430.1	1e-130	homeobox-leucine zipper protein 17

Link Out ? help Back to Top
Phytozome	346639
Entrez Gene	9312818

Publications ? help Back to Top
Zhao P, et al. ATHB17 enhances stress tolerance by coordinating photosynthesis associated nuclear gene and ATSIG5 expression in response to abiotic stress. Sci Rep, 2017. 7: p. 45492 [PMID:28358040]