PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 347705
Common NameARALYDRAFT_347705
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB
Protein Properties Length: 259aa    MW: 29864.6 Da    PI: 9.7132
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
347705genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.66.1e-181057148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT++Ed llv+ v+++G ++W+ Ia+  g++Rt+k+c++rw +yl
           347705 10 KGPWTEQEDILLVNFVHLFGDRRWDFIAKVSGLNRTGKSCRLRWVNYL 57
                     79********************************************97 PP
2Myb_DNA-binding56.18.2e-1863108148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T++E+ l +++++++G++ W++Iar+++ gRt++++k++w++++
           347705  63 RGKMTPQEERLVLELHAKWGNR-WSKIARKLP-GRTDNEIKNYWRTHM 108
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.196557IPR017930Myb domain
SMARTSM007175.2E-16959IPR001005SANT/Myb domain
SuperFamilySSF466895.03E-309104IPR009057Homeodomain-like
PfamPF002499.6E-171057IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.6E-211164IPR009057Homeodomain-like
CDDcd001672.04E-111257No hitNo description
PROSITE profilePS5129427.81458112IPR017930Myb domain
SMARTSM007172.2E-1762110IPR001005SANT/Myb domain
PfamPF002492.9E-1663107IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-2465111IPR009057Homeodomain-like
CDDcd001673.62E-1265108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MKMMQEENRK GPWTEQEDIL LVNFVHLFGD RRWDFIAKVS GLNRTGKSCR LRWVNYLHPG  60
LKRGKMTPQE ERLVLELHAK WGNRWSKIAR KLPGRTDNEI KNYWRTHMRK KAQEKKRPVS  120
PTSSFSNCSS SSMTTTTTNT QDTSCHSRKS SGKVSFYDTG GSRSTGEMMS QETEDVYSMD  180
DIWREIDHSA VNIIKPVKDI YSEQSHCLSY PTLASPTWES SLDSIWNMDA DKSKMSSSFA  240
KDQFPFCFQH SRSPWSPG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A4e-28101124105MYB PROTO-ONCOGENE PROTEIN
1h88_C4e-28211250159MYB PROTO-ONCOGENE PROTEIN
1h89_C4e-28211250159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap347705
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2727330.0AF272733.1 Arabidopsis thaliana putative transcription factor (MYB48) mRNA, complete cds.
GenBankAY5195940.0AY519594.1 Arabidopsis thaliana MYB transcription factor (At3g46130) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002875766.10.0transcription factor MYB48 isoform X2
SwissprotQ9LX821e-164MYB48_ARATH; Transcription factor MYB48
TrEMBLD7LMV90.0D7LMV9_ARALL; Uncharacterized protein
STRINGfgenesh1_pg.C_scaffold_50010970.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25022774
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46130.11e-157myb domain protein 48
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nishida S,Kakei Y,Shimada Y,Fujiwara T
    Genome-wide analysis of specific alterations in transcript structure and accumulation caused by nutrient deficiencies in Arabidopsis thaliana.
    Plant J., 2017. 91(4): p. 741-753
    [PMID:28586097]
  4. Imran QM, et al.
    Transcriptome profile of NO-induced Arabidopsis transcription factor genes suggests their putative regulatory role in multiple biological processes.
    Sci Rep, 2018. 8(1): p. 771
    [PMID:29335449]