PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

347878

Common Name

ARALYDRAFT_347878

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

bHLH

Protein Properties

Length: 261aa MW: 29224.8 Da PI: 5.2794

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
347878	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	32.2	1.9e-10	151	197	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+ +Er RR++i +++ L++l+P + +k Ka +L + ++YI+sLq 347878 151 HSLAERARREKISERMKFLQDLIPGC----NKIIGKALVLDEIINYIQSLQ 197 999*********************....999***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.03E-9	144	201	No hit	No description
SuperFamily	SSF47459	6.8E-17	144	211	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.269	146	196	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.8E-17	147	213	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.4E-8	151	197	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.2E-8	152	202	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 261 aa Download sequence Send to blast
MSDPEILNPV MVPPVVNEST FTEFWPFSVN YDVRLPLNSG QDFRYSGNSY ISGAEESTVT 60 EQTGGGRKRR ALTSQDESSK MMFSSCTSVN RLKESSKKKM KVCLSEGETE DGLRREGETS 120 SGGGSKETEE KSPLKDYIHV RARRGQATDR HSLAERARRE KISERMKFLQ DLIPGCNKII 180 GKALVLDEII NYIQSLQRQV EFLSMKLEIV NSDVSNGPKV GMFPSGDLNT LPIEVQRTMF 240 DQQEADESRG SQPDWLHMGD *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	347878

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010515095.1	1e-146	PREDICTED: transcription factor bHLH79 isoform X2
Swissprot	Q9LV17	1e-100	BH079_ARATH; Transcription factor bHLH79
TrEMBL	D7LRG1	0.0	D7LRG1_ARALL; Uncharacterized protein
STRING	fgenesh1_pg.C_scaffold_5001270	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1855	28	78

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62610.1	1e-97	bHLH family protein

Link Out ? help Back to Top
Phytozome	347878
Entrez Gene	9313645

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]