PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 347985
Common NameARALYDRAFT_347985
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB
Protein Properties Length: 255aa    MW: 28996.9 Da    PI: 8.3231
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
347985genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.45.2e-162067148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEde+l   v ++G g+W+tI+   g+ R +k+c++rw +yl
           347985 20 KGLWSPEEDEKLRSHVLKYGHGCWSTIPIQAGLQRNGKSCRLRWVNYL 67
                     678*******************************************97 PP
2Myb_DNA-binding48.12.7e-1576117447
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +T+eE+ +l+ ++ +lG++ W+ I++ ++ gRt++++k++w++ 
           347985  76 FTKEEETILLSLHSMLGNK-WSQISKFLP-GRTDNEIKNYWHSN 117
                      9******************.*********.***********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.5991567IPR017930Myb domain
SMARTSM007171.6E-111969IPR001005SANT/Myb domain
SuperFamilySSF466893.19E-3019114IPR009057Homeodomain-like
PfamPF002497.1E-142067IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.0E-222174IPR009057Homeodomain-like
CDDcd001673.15E-102367No hitNo description
PROSITE profilePS5129424.3368122IPR017930Myb domain
SMARTSM007176.1E-1572120IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.5E-2475121IPR009057Homeodomain-like
CDDcd001671.97E-1176118No hitNo description
PfamPF002496.5E-1476117IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MVFKSEKSNP KMKSKEKQRK GLWSPEEDEK LRSHVLKYGH GCWSTIPIQA GLQRNGKSCR  60
LRWVNYLRPG LKKSLFTKEE ETILLSLHSM LGNKWSQISK FLPGRTDNEI KNYWHSNLKK  120
GVVTLTQHET TRTPQTPSIT NSLEALQSTT ERSASSINVA ETFNAQISSF SPSLVFSDWL  180
DHSLLMDQST QKSSFVQNLV VPEERGFIGL CGPCYLENNP LPDFVPTSDF LFEDDTSFYD  240
NFLIGSLINE LRPM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-272012227128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes photomorphogenesis in the light by participating in the transmission of phytochrome A (phyA) signals to downstream responses (PubMed:11581165, PubMed:19482971). Probably acts by activating expression of light-induced genes. In darkness, its degradation prevents the activation of light-induced genes (PubMed:11581165). {ECO:0000269|PubMed:11581165, ECO:0000269|PubMed:19482971}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap347985
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By hormones or elicitors treatment. By exposure to abiotic stress. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5195960.0AY519596.1 Arabidopsis thaliana MYB transcription factor (At3g48920) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002875933.10.0transcription factor LAF1
SwissprotQ9M0K45e-59LAF1_ARATH; Transcription factor LAF1
TrEMBLD7LS230.0D7LS23_ARALL; AtMYB45
STRINGfgenesh1_pg.C_scaffold_50013770.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48920.11e-154myb domain protein 45
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]