PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 351629
Common NameARALYDRAFT_351629, WRKY50
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family WRKY
Protein Properties Length: 174aa    MW: 19351.2 Da    PI: 6.9329
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
351629genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.64.7e-32112170159
             ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
    WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
             ldDg++WrKYG+K+vk+s++pr+YY+C+  +Cpvkk+ver+++dp++v++tYeg+Hnh+
  351629 112 LDDGFKWRKYGKKMVKNSPYPRNYYKCSVDSCPVKKRVERDRDDPSFVITTYEGSHNHS 170
             59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.3E-3498171IPR003657WRKY domain
SuperFamilySSF1182901.57E-28105170IPR003657WRKY domain
PROSITE profilePS5081129.402107172IPR003657WRKY domain
SMARTSM007742.1E-36112171IPR003657WRKY domain
PfamPF031062.2E-25113169IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0050832Biological Processdefense response to fungus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MNGAETNLAR SYSDDTHSGF EFPELDLSDE WMDDDLVSAV SGMNQSYGYQ TSDVAAALFS  60
GSSSSFCHPE SQRTNASVAA TATASANNQN KKEKKKVKER VAFKTRSEVE VLDDGFKWRK  120
YGKKMVKNSP YPRNYYKCSV DSCPVKKRVE RDRDDPSFVI TTYEGSHNHS SAN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-27102169774Probable WRKY transcription factor 4
2lex_A4e-27102169774Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00531DAPTransfer from AT5G26170Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap351629
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0718470.0AY071847.1 Arabidopsis thaliana WRKY transcription factor 50 (WRKY50) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002874303.11e-127probable WRKY transcription factor 50
SwissprotQ8VWQ51e-105WRK50_ARATH; Probable WRKY transcription factor 50
TrEMBLD7M4P81e-126D7M4P8_ARALL; WRKY DNA-binding protein 50
STRINGfgenesh1_pg.C_scaffold_60022221e-127(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61212747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26170.13e-93WRKY DNA-binding protein 50
Publications ? help Back to Top
  1. Brand LH,Kirchler T,Hummel S,Chaban C,Wanke D
    DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro.
    Plant Methods, 2010. 6: p. 25
    [PMID:21108821]