PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

352012

Common Name

ARALYDRAFT_352012

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

MYB_related

Protein Properties

Length: 200aa MW: 22652.3 Da PI: 7.1952

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
352012	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	42.9	1.1e-13	94	138	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +W++ E+ l++++ +++G+g+Wk I+r+ k Rt q+ s+ qky 352012 94 PWSQNEHRLFLEGLNKFGKGDWKNISRHCVKSRTSTQVASHAQKY 138 7*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	5.6	3	54	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	2.43E-6	6	59	IPR009057	Homeodomain-like
PROSITE profile	PS51294	15.43	87	143	IPR017930	Myb domain
SuperFamily	SSF46689	2.09E-17	88	144	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.8E-10	89	144	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	6.2E-16	90	141	IPR006447	Myb domain, plants
SMART	SM00717	1.8E-8	91	141	IPR001005	SANT/Myb domain
Pfam	PF00249	3.4E-10	94	138	IPR001005	SANT/Myb domain
CDD	cd00167	1.60E-9	94	139	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 200 aa Download sequence Send to blast
MAAAPQWTRA DDKDFESALV IFPEGSPYFL ENIAQTLKKT VDEVNNHYNT LVHDVDLIES 60 GKFVLPKYPD DDYVTLTEAS PSRNKGTGKK NGIPWSQNEH RLFLEGLNKF GKGDWKNISR 120 HCVKSRTSTQ VASHAQKYFN RLKRGITDGK RSSIHDMTLG DVENVPGSNL TCMDQQPHFG 180 DQISWNQCYL SQENFPVFR*

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269\|PubMed:11937495, ECO:0000269\|PubMed:9118809}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	352012

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002872443.2	1e-151	transcription factor DIVARICATA
Swissprot	Q8S9H7	5e-37	DIV_ANTMA; Transcription factor DIVARICATA
TrEMBL	D7LX92	1e-149	D7LX92_ARALL; Uncharacterized protein
STRING	fgenesh1_pg.C_scaffold_6002605	1e-150	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14731	7	19

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G09450.1	3e-99	MYB_related family protein

Link Out ? help Back to Top
Phytozome	352012
Entrez Gene	9308512

Publications ? help Back to Top
Galego L,Almeida J Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers. Genes Dev., 2002. 16(7): p. 880-91 [PMID:11937495] Almeida J,Rocheta M,Galego L Genetic control of flower shape in Antirrhinum majus. Development, 1997. 124(7): p. 1387-92 [PMID:9118809]