PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

352380

Common Name

ARALYDRAFT_352380

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

G2-like

Protein Properties

Length: 168aa MW: 19375.2 Da PI: 10.4522

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
352380	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	82	6.5e-26	15	68	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 p +rWt +L rFv++ve LGG+ AtPk+il +m+v +Lt++hvkSHLQ+YR 352380 15 PSMRWTDDLDIRFVQVVEFLGGERSATPKKILSHMGVRDLTISHVKSHLQMYRK 68 569**************************************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.111	11	71	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	6.3E-24	13	69	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.33E-14	13	71	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.8E-24	16	70	IPR006447	Myb domain, plants
Pfam	PF00249	3.3E-9	17	67	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 168 aa Download sequence Send to blast
MRDLIVRSYI RPKLPSMRWT DDLDIRFVQV VEFLGGERSA TPKKILSHMG VRDLTISHVK 60 SHLQMYRKKK EAESIKARRM IHEMKRRQSQ QYLQIYERAT QFIQNHQRLQ LDNTEKITSS 120 LGSSNKSLYQ SSRVGFNENR DNDVVVAGGG VIGEEGLSLE LTLGHKY*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	352380

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002874801.1	1e-121	putative Myb family transcription factor At1g14600
TrEMBL	D7M1R6	1e-119	D7M1R6_ARALL; Uncharacterized protein
STRING	fgenesh1_pg.C_scaffold_6002973	1e-120	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM363	28	184

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G04580.1	7e-77	G2-like family protein

Link Out ? help Back to Top
Phytozome	352380
Entrez Gene	9308769