PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 352381
Common NameARALYDRAFT_352381
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family G2-like
Protein Properties Length: 131aa    MW: 15395.6 Da    PI: 10.2007
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
352381genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like45.22.1e-1416452655
  G2-like 26 kAtPktilelmkvkgLtlehvkSHLQkYRl 55
             +AtPk+il+ m+v +Lt+++vkSHLQ+YR 
   352381 16 RATPKKILRYMGVSDLTMSQVKSHLQMYRN 45
             8****************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.33E-71448IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.0E-131446IPR009057Homeodomain-like
TIGRFAMsTIGR015574.1E-131647IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 131 aa     Download sequence    Send to blast
MTDSIVRSYI RSQMPRATPK KILRYMGVSD LTMSQVKSHL QMYRNKKEAN SIQERRMIRQ  60
MKLRQSQQYL QIYERARNVT QDFQNHQRVQ LDITEKVGLN ENRDNDVVVV DDVAIGEEGL  120
SFELTLGRKY *
Cis-element ? help Back to Top
SourceLink
PlantRegMap352381
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020879380.19e-73transcription repressor KAN1
TrEMBLD7M1R76e-90D7M1R7_ARALL; Uncharacterized protein
STRINGfgenesh1_pg.C_scaffold_60029749e-91(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36328184
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04580.15e-35G2-like family protein