PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 353697
Common NameARALYDRAFT_353697
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family HSF
Protein Properties Length: 199aa    MW: 22369.2 Da    PI: 9.6998
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
353697genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind539.6e-175888100
                   HHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXX CS
  HSF_DNA-bind   8 eiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekikrk 100
                    ++  + ++ lisw eng+sf+++d++ef +++Lp++ + s+f  Fv+ L++YgF++v++++          e++++ F kgk +l  +i+++
        353697   5 AVIVINLITALISWGENGKSFIIWDQQEFCRDLLPRVVRISSFPIFVKRLETYGFTEVESDH---------FEYANDDFVKGKPKLALEIHKR 88 
                   5555566789**************************************************99.........67***********999999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.0E-12188IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.3E-19288IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.3E-16287IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.26E-151285IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MKLHAVIVIN LITALISWGE NGKSFIIWDQ QEFCRDLLPR VVRISSFPIF VKRLETYGFT  60
EVESDHFEYA NDDFVKGKPK LALEIHKRFV QTLIRPNSVF KPLGIEPAAL KAMMKQYKEC  120
LPPGTFDFKP SLRDPDALRA HLMDAMKQGR AVPKDPLSLH EKELAATLMA DLKDVIKRRK  180
AFLMEALAAA GSSSGVTQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMap353697
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL0216335e-47AL021633.2 Arabidopsis thaliana DNA chromosome 4, BAC clone F8F16 (ESSA project).
GenBankAL1615785e-47AL161578.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 74.
GenBankCP0026875e-47CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020872461.11e-134heat stress transcription factor B-4b
TrEMBLD7MB831e-144D7MB83_ARALL; Uncharacterized protein
STRINGfgenesh1_pg.C_scaffold_70008701e-145(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2100235
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.12e-20heat shock transcription factor B2A