PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 355996
Common NameARALYDRAFT_355996
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB
Protein Properties Length: 273aa    MW: 31189.4 Da    PI: 10.3345
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
355996genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.21.2e-152670348
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rWT  Ed++l+++v+  G++ W+ I + m+ gRt+k c+srw+++l
           355996 26 RWTLSEDLKLKELVAVSGPRKWTQIGKQMQ-GRTGKTCRSRWFNHL 70
                     9*****************************.*************97 PP
2Myb_DNA-binding34.64.5e-1178120347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +++ eE++ll++a +++G   W++Iar +  gRt+ q +  w+k+
           355996  78 AFSDEEEKLLIKAYNEWGCQ-WSRIARLFR-GRTDRQMQKLWRKV 120
                      79****************88.*********.******99999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.3981974IPR017930Myb domain
SuperFamilySSF466891.8E-2322117IPR009057Homeodomain-like
SMARTSM007171.2E-112372IPR001005SANT/Myb domain
PfamPF002495.1E-142670IPR001005SANT/Myb domain
CDDcd001674.29E-102670No hitNo description
Gene3DG3DSA:1.10.10.608.0E-232677IPR009057Homeodomain-like
SMARTSM007171.9E-775123IPR001005SANT/Myb domain
PROSITE profilePS5129411.12975125IPR017930Myb domain
CDDcd001673.81E-678121No hitNo description
Gene3DG3DSA:1.10.10.609.2E-1578123IPR009057Homeodomain-like
PfamPF002495.6E-978120IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MESALVAFKR PSNEVQEEIN SLLSRRWTLS EDLKLKELVA VSGPRKWTQI GKQMQGRTGK  60
TCRSRWFNHL DPRIRNDAFS DEEEKLLIKA YNEWGCQWSR IARLFRGRTD RQMQKLWRKV  120
MKKLKKTSTS IHELIANDKR EGFLRDESRK MPQEETTHLE ANKYLKETRQ YLAHQRHFYN  180
IPTGYLPMST PHVSISQPSS SSLPSKPEDA FTPHASISQP SSSSLPSKPK DAFTPHVSIS  240
QPSSSSSLPS KSEEAKANVL VKYIDFLGVG DS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-22191232106B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap355996
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0100772e-81AB010077.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MYH19.
GenBankCP0026882e-81CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002870735.21e-137transcription factor MYB105
TrEMBLD7MJE00.0D7MJE0_ARALL; Uncharacterized protein
STRINGfgenesh1_pg.C_scaffold_70031690.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1909957
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G29020.11e-31myb domain protein 110