PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

356188

Common Name

ARALYDRAFT_356188

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

NF-YC

Protein Properties

Length: 150aa MW: 16957.7 Da PI: 9.4391

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
356188	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	24.2	7e-08	88	118	27	57
NF-YC 27 kkilkadedvkmisaeaPvllskacelfile 57 k ++k+ ++ km+s ++P l+kace+fi e 356188 88 KSVMKFTPHFKMVSLDSPCHLAKACEIFIEE 118 789*************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	6.1E-5	88	118	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 150 aa Download sequence Send to blast
MMRPTVASSS VNPNPSIEEY CIMMKPSEPY VHSVRQIHDI KKASLSYEPG KTSTKLRSRD 60 VSGSPQFHFR GKTKGYMTRL IYLWLGKKSV MKFTPHFKMV SLDSPCHLAK ACEIFIEEGV 120 PHDVVHQQMF TSANVNVPEM KTLIDVDQI*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	356188

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	D7MK45	1e-108	D7MK45_ARALL; Predicted protein
STRING	fgenesh1_pg.C_scaffold_7003361	1e-108	(Arabidopsis lyrata)

Link Out ? help Back to Top
Phytozome	356188
Entrez Gene	9306938