PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

356189

Common Name

ARALYDRAFT_356189

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

NF-YC

Protein Properties

Length: 249aa MW: 28422.4 Da PI: 4.8679

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
356189	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	106.5	1.7e-33	60	154	4	99
NF-YC 4 sfwekqiekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 +fw ++ + ++ +lPlarikk++k+d++vkm+s+++ vll+kac++fi e+tlr+w h+++++r+t++ +di +a+++++i+d l d v 356189 60 KFWVHHN-SIGLHEKLDLPLARIKKVMKSDPQVKMVSSDSHVLLAKACDIFIEEVTLRAWRHTQSCSRNTIQSCDIYKALKQSVIYDELNDLVSFG 154 5666543.333345779**************************************************************************99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	8.83E-21	68	142	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	1.8E-24	73	137	IPR009072	Histone-fold
Pfam	PF00808	6.4E-18	76	138	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence Send to blast
MVRPIVATSS VNPNPTVEES FVMMEPSEHY VNSVRQIHDQ SWLVCTTDQE RHLLNQDLVK 60 FWVHHNSIGL HEKLDLPLAR IKKVMKSDPQ VKMVSSDSHV LLAKACDIFI EEVTLRAWRH 120 TQSCSRNTIQ SCDIYKALKQ SVIYDELNDL VSFGQRSVTH QGVPQDVVQQ QLFPSANVNV 180 PEMKDPIDID KIQQQCLYFQ TTEHFIDTGE FELDPNLIFD VSAMDCTYGF DCAVRIVLVE 240 AVFEEKLS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_C	4e-23	76	151	42	117	HapE
4g92_C	4e-23	76	151	42	117	HapE
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	356189

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020872129.1	1e-105	nuclear transcription factor Y subunit C-10 isoform X1
Refseq	XP_020872130.1	1e-105	nuclear transcription factor Y subunit C-10 isoform X2
TrEMBL	D7MK46	0.0	D7MK46_ARALL; Uncharacterized protein
STRING	fgenesh1_pg.C_scaffold_7003362	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM19106	6	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G38140.1	2e-37	nuclear factor Y, subunit C12

Link Out ? help Back to Top
Phytozome	356189
Entrez Gene	9306939