PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 356853
Common NameARALYDRAFT_356853
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family G2-like
Protein Properties Length: 204aa    MW: 22424.2 Da    PI: 3.8758
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
356853genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like22.91.9e-07153176326
  G2-like   3 rlrWtpeLHerFveaveqLGGsek 26 
               +rW peLHe F+eav++L G+e+
   356853 153 GMRWIPELHELFLEAVKKLEGPEN 176
              59*******************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PRINTSPR006253.8E-61737IPR001623DnaJ domain
Gene3DG3DSA:1.10.287.1105.6E-92268IPR001623DnaJ domain
SuperFamilySSF465659.16E-92369IPR001623DnaJ domain
PRINTSPR006253.8E-63756IPR001623DnaJ domain
Gene3DG3DSA:1.10.10.602.9E-4152177IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MKNIPIESSL QRVPSSFLIL SLKELAQAYE VLSDPEKREI YDEYGDDALK EGLIDDEQGR  60
YSQFSEDFLL SNPCDGGDSS LLTLSGDASS DLDLGCPNDN FSLTEQLELQ FLSDELELGI  120
TDSAETPDLI FFVLIAGDLP KLSPGSAVNH IPGMRWIPEL HELFLEAVKK LEGPENCGYV  180
SMILSHHCLS LINARLLVDS MDV*
Cis-element ? help Back to Top
SourceLink
PlantRegMap356853
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020880363.19e-83myb family transcription factor PHL6
SwissprotQ949U21e-27PHL6_ARATH; Myb family transcription factor PHL6
TrEMBLD7MRH01e-143D7MRH0_ARALL; Uncharacterized protein
STRINGfgenesh1_pg.C_scaffold_80006401e-144(Arabidopsis lyrata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13040.24e-30G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Nguyen HT, et al.
    A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2.
    Plant Cell Physiol., 2016. 57(4): p. 784-97
    [PMID:26872838]