PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 357630
Common NameARALYDRAFT_357630
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family NAC
Protein Properties Length: 185aa    MW: 21318.1 Da    PI: 5.628
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
357630genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM131.18.2e-4151323127
     NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kgelvg 101
             +G++F+Ptdeelv +yL++k+ g+++ + e+i e++iy+++Pw+Lp + +++++++ w+fFs r+ + a  +r++r+t+sgyWk tg+   ++++   ++++g
  357630   5 VGYEFRPTDEELVGFYLRNKLLGNSCLI-EAIGELNIYQFDPWELPsQsMMRSNDTVWFFFSGREITFAIRNRQSRTTASGYWKITGQPSVIKERsiFQRVIG 106
             79***********************999.89**************96347778999*********************************999998777789** PP

     NAM 102 lkktLvfykgrapkgektdWvmheyr 127
              kktLvf+kg++p+ge+t+W+mhey+
  357630 107 QKKTLVFHKGKSPNGERTHWIMHEYS 132
             *************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100544.4613151IPR003441NAC domain
PfamPF023659.9E-245132IPR003441NAC domain
SuperFamilySSF1019412.62E-465151IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MMSIVGYEFR PTDEELVGFY LRNKLLGNSC LIEAIGELNI YQFDPWELPS QSMMRSNDTV  60
WFFFSGREIT FAIRNRQSRT TASGYWKITG QPSVIKERSI FQRVIGQKKT LVFHKGKSPN  120
GERTHWIMHE YSDLSLPESQ RTHVVCKVEY TGHDVESVLV DYGPSDFGLL PSLTQEDWDF  180
AFSD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-30613118138Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). Involved in salt stress response during seed germination and seedling growth. Binds the auxin-responsive IAA30 gene promoter and may serve as a molecular link that interconnects a developmental feedback loop of auxin signaling with a salt signal transduction pathway during seed germination (PubMed:21450938). {ECO:0000269|PubMed:21450938}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap357630
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress and abscisic acid (ABA) in roots. {ECO:0000269|PubMed:21450938}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002864281.11e-137NAC domain-containing protein 69
SwissprotQ9M1262e-43NAC69_ARATH; NAC domain-containing protein 69
TrEMBLD7MTJ91e-136D7MTJ9_ARALL; Uncharacterized protein
STRINGfgenesh1_pg.C_scaffold_80014171e-136(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19821971
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01550.19e-46NAC domain containing protein 69
Publications ? help Back to Top
  1. Liang M, et al.
    Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana.
    Traffic, 2015. 16(10): p. 1062-74
    [PMID:26201836]
  2. He L, et al.
    Arabidopsis ANAC069 binds to C[A/G]CG[T/G] sequences to negatively regulate salt and osmotic stress tolerance.
    Plant Mol. Biol., 2017. 93(4-5): p. 369-387
    [PMID:27975189]