PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 357679
Common NameARALYDRAFT_331771, ARALYDRAFT_357679
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB
Protein Properties Length: 321aa    MW: 35909.6 Da    PI: 6.435
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
357679genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.56.3e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEde+lv +++ +G+g W+t ++  g++R++k+c++rw +yl
           357679 14 KGPWTPEEDEKLVGYIQTHGPGKWRTLPKNAGLKRCGKSCRLRWTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding52.79.7e-1767111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg ++ +E+e +++++++lG++ W++Ia +++ gRt++++k++w+++
           357679  67 RGEFSLQEEETIIQLHRLLGNK-WSAIAIHLP-GRTDNEIKNYWNTH 111
                      899*******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.3E-25764IPR009057Homeodomain-like
PROSITE profilePS5129418.092961IPR017930Myb domain
SuperFamilySSF466893.0E-3012108IPR009057Homeodomain-like
SMARTSM007177.7E-141363IPR001005SANT/Myb domain
PfamPF002499.8E-161461IPR001005SANT/Myb domain
CDDcd001673.19E-111661No hitNo description
PROSITE profilePS5129425.8462116IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.3E-2665116IPR009057Homeodomain-like
SMARTSM007174.7E-1666114IPR001005SANT/Myb domain
PfamPF002491.7E-1567111IPR001005SANT/Myb domain
CDDcd001676.41E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MGKSSSSEES EVKKGPWTPE EDEKLVGYIQ THGPGKWRTL PKNAGLKRCG KSCRLRWTNY  60
LRPDIKRGEF SLQEEETIIQ LHRLLGNKWS AIAIHLPGRT DNEIKNYWNT HIKKKLLRMG  120
IDPVTHCPRI NLLQLSSFLT SSLFKSMSQP MNTPFDLTTS SINPDILNHL TASLNNVQTE  180
SYQPNQQLQN DLNNDQTTFT GLLNSSTPPV QWQNNGEYLG DYLSYNGSGD PSMNQVPQTG  240
NYSSAAFVSD QINDGENFKA GWNFSSSMLH GTSSSSSTPL DSSSNFYVNG GSEDDRESYG  300
SDMLMFHHHH DQNNNALNLS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A6e-30111161105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in osmotic stress and wounding signaling pathways (Probable). Contributes to basal resistance against the herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:19517001, ECO:0000305|PubMed:12857823}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00563DAPTransfer from AT5G54230Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap357679
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by light (PubMed:8980549). Induced by wounding, salt stress and abscisic acid (PubMed:12857823). Induced by the lepidopteran herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:12857823, ECO:0000269|PubMed:19517001, ECO:0000269|PubMed:8980549}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1759910.0AF175991.1 Arabidopsis thaliana putative transcription factor (MYB49) mRNA, complete cds.
GenBankAY0598200.0AY059820.1 Arabidopsis thaliana Myb-related transcription factor-like protein (At5g54230; MDK4.5) mRNA, complete cds.
GenBankAY0815120.0AY081512.1 Arabidopsis thaliana Myb-related transcription factor-like protein (At5g54230) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002866030.10.0transcription factor MYB102
RefseqXP_002866031.10.0transcription factor MYB102
SwissprotQ9LDR84e-86MY102_ARATH; Transcription factor MYB102
TrEMBLD7MU680.0D7MU68_ARALL; Uncharacterized protein
STRINGfgenesh1_pg.C_scaffold_80014660.0(Arabidopsis lyrata)
STRINGfgenesh1_pm.C_scaffold_80011140.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM144651722
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54230.11e-175myb domain protein 49
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]
  4. Zhu L,Guo J,Ma Z,Wang J,Zhou C
    Arabidopsis Transcription Factor MYB102 Increases Plant Susceptibility to Aphids by Substantial Activation of Ethylene Biosynthesis.
    Biomolecules, 2019.
    [PMID:29880735]