PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 358128
Common NameARALYDRAFT_358128
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family NAC
Protein Properties Length: 252aa    MW: 29122.4 Da    PI: 5.4723
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
358128genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM43.41e-131090379
     NAM  3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkya....tgkrknratk 79
             G++F+Pt ee++++yLk+k++g+++    +i   d+y  ePw L++  +   +e+ewy+Fs+r++ ++    +g+++n++ k
  358128 10 EGIHFDPTYEEVIHKYLKPKLRGEDCGD--FILMKDVYAKEPWLLDHpnNSFFKEDEWYYFSTRNQISEkkigRGTNTNKKQK 90
            599*********************9665..788899*********74224344889******998766533334555555444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100512.1438174IPR003441NAC domain
SuperFamilySSF1019413.53E-199132IPR003441NAC domain
PfamPF023652.3E-810110IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MTMEYYKEDE GIHFDPTYEE VIHKYLKPKL RGEDCGDFIL MKDVYAKEPW LLDHPNNSFF  60
KEDEWYYFST RNQISEKKIG RGTNTNKKQK RGDGASAPSS ESGWIMDEFV IVLPKPDEDK  120
FQELVVCKIH KKKESKKDHQ HEASSSSEQQ PIKKRKSKKS KKEHESVLAA SSEQQQPLLC  180
GCNESEIPKI ASSPCSAAET ERNGEQSGEG NMVHQTEKNA MEMTREEEGD WIADNDIFVN  240
RQYRDQPYSW I*
Cis-element ? help Back to Top
SourceLink
PlantRegMap358128
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1333143e-64AL133314.1 Arabidopsis thaliana DNA chromosome 3, BAC clone F12A12.
GenBankCP0026863e-64CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002864594.11e-165NAC domain-containing protein 19
TrEMBLD7MR650.0D7MR65_ARALL; Uncharacterized protein
STRINGfgenesh1_pg.C_scaffold_80019150.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26071358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18300.11e-11NAC domain containing protein 88