PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

359494

Common Name

ARALYDRAFT_672259

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

NF-YA

Protein Properties

Length: 189aa MW: 21094 Da PI: 11.3078

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
359494	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	103.4	2.1e-32	50	106	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep++VNaKQyq+Il+RRq+Rakle+++kl +k rkpylheSRh hAl+R+RgsgGrF 359494 50 NEPIFVNAKQYQAILRRRQRRAKLEAQNKL-IKVRKPYLHESRHLHALKRARGSGGRF 106 59**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	3.0E-36	48	109	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	36.949	49	109	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	7.6E-27	51	106	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	5.1E-23	52	74	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	54	74	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	5.1E-23	83	106	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 189 aa Download sequence Send to blast
AASWPLHGNV TPHFNGFLSF PYASQHMVQH PQIGGLVPCR VPLPHNIPEN EPIFVNAKQY 60 QAILRRRQRR AKLEAQNKLI KVRKPYLHES RHLHALKRAR GSGGRFLNTK KLQESKSSQA 120 PPFLDPPHVF KNSPGKFRQR DISRGGVGSS GSTTSCSDIT GNNNDMFQQN PQFGFSGYPS 180 NHHVSVLM*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	5e-20	50	126	2	77	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	64	71	RRRQRRAK

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	359494

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB493613	0.0	AB493613.1 Arabidopsis thaliana At3g14020 mRNA for hypothetical protein, partial cds, clone: RAAt3g14020.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002882866.1	1e-139	nuclear transcription factor Y subunit A-6 isoform X1
Swissprot	Q9LVJ7	1e-117	NFYA6_ARATH; Nuclear transcription factor Y subunit A-6
TrEMBL	D7L2B4	1e-137	D7L2B4_ARALL; Predicted protein
STRING	Al_scaffold_0003_1456	1e-138	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14733	16	20

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G14020.1	1e-110	nuclear factor Y, subunit A6

Link Out ? help Back to Top
Phytozome	359494
Entrez Gene	9318932

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]