PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

36301

Common Name

SELMODRAFT_450949

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

GRAS

Protein Properties

Length: 192aa MW: 21154.9 Da PI: 6.2592

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
36301	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	166.9	1.6e-51	2	191	5	198
GRAS 5 LlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleaveg 108 +++c ea++++ +++a al+++l++ +sp+g++++Rla+yf eAL ar+++++ ly+++++++t +e+l+++++ s++sP + + + +Nq+Il+++++ 36301 2 IVKCCEAIAANATTQAYALVSELRDKSSPTGTTVERLAFYFSEALVARITGTGRLLYNTFKSRRT----IDETLQIFSTVSQTSPGFGLPIFFTNQTILDETSS 101 689**********************************************999999999888....69999999************************* PP GRAS 109 eervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198 + rvH++Df+i+ G W++L++ +++R++gpp++R+T+v++p+++ e +g +L++fA+++gvpfef+ +v+ ++++++ ++L ++p 36301 102 AARVHVVDFGIGPGYRWLCLIKDFSERSGGPPHFRVTAVDRPSNSLFFPREDVGGKLERFASSVGVPFEFHSVVTAEWDSIQSSQLMIQP 191 *****************************************999*********************99*********9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	33.592	1	192	IPR005202	Transcription factor GRAS
Pfam	PF03514	5.5E-49	2	191	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 192 aa Download sequence Send to blast
SIVKCCEAIA ANATTQAYAL VSELRDKSSP TGTTVERLAF YFSEALVARI TGTGRLLYNT 60 FKSRRTIDET LQIFSTVSQT SPGFGLPIFF TNQTILDETS SAARVHVVDF GIGPGYRWLC 120 LIKDFSERSG GPPHFRVTAV DRPSNSLFFP REDVGGKLER FASSVGVPFE FHSVVTAEWD 180 SIQSSQLMIQ PD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	2e-22	4	171	25	192	Protein SCARECROW
5b3h_A	1e-22	4	171	24	191	Protein SCARECROW
5b3h_D	1e-22	4	171	24	191	Protein SCARECROW
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002963651.1	1e-137	scarecrow-like protein 14
TrEMBL	D8QY01	1e-135	D8QY01_SELML; GRAS family protein
STRING	EFJ35522	1e-136	(Selaginella moellendorffii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G59450.1	9e-33	GRAS family protein

Link Out ? help Back to Top
Phytozome	36301
Entrez Gene	9655180

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]