PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 36987
Common NameSELMODRAFT_36987
Organism
Selaginella moellendorffii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family C2H2
Protein Properties Length: 171aa    MW: 19684.7 Da    PI: 10.3322
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
36987genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.36.5e-063251120
             EEETTTTEEESSHHHHHHHH CS
  zf-C2H2  1 ykCpdCgksFsrksnLkrHi 20
             ++Cp C+k F+r  n++ H+
    36987 32 FSCPVCSKNFNRYNNMQMHM 51
             89*****************9 PP
2zf-C2H216.22.9e-05116138123
              EEETTTTEEESSHHHHHHHHHHT CS
  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
              ++C +Cgk F  + + ++H +++
    36987 116 FPCRKCGKAFAVRGDWRTHEKNC 138
              89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.6E-52754No hitNo description
PROSITE profilePS5015710.0763259IPR007087Zinc finger, C2H2
SMARTSM003550.353254IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.607.3E-73251IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002803454IPR007087Zinc finger, C2H2
SMARTSM0035522079111IPR015880Zinc finger, C2H2-like
SuperFamilySSF576677.75E-799136No hitNo description
Gene3DG3DSA:3.30.160.604.0E-6102136IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.767116136IPR007087Zinc finger, C2H2
SMARTSM0035549116136IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
EAERLQRCKG RLSEGQYWIP TPAQILVGPT QFSCPVCSKN FNRYNNMQMH MWGHGSQYRR  60
GPESLRGAQP TAMLRLPCYC CAVGCRNNID HPRARPLKDF RTLQTHYKRK HGIKPFPCRK  120
CGKAFAVRGD WRTHEKNCGK LWYCSCGSDF KHKRSLKDHI RAFGNGHASC G
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002973204.21e-129protein TRANSPARENT TESTA 1
RefseqXP_024534081.11e-129protein TRANSPARENT TESTA 1
RefseqXP_024534082.11e-129protein TRANSPARENT TESTA 1
SwissprotQ9SVY11e-108ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLD8RQ191e-125D8RQ19_SELML; Uncharacterized protein (Fragment)
STRINGEFJ255781e-126(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP4101597
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-111C2H2 family protein
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]
  2. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  3. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]