PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

37169

Common Name

SELMODRAFT_26920, SELMODRAFT_37169

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

LBD

Protein Properties

Length: 119aa MW: 13138 Da PI: 8.2136

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
37169	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	139	1.6e-43	6	106	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkeel 101 +CaaCk+lrr+Ca++C++apyf ++p+kfa+vhk+FGasnv+k+l+++pe +r+d+++slvyeA+ar+rdPvyG++g+i++lqqq ++l+ae+++++e++ 37169 6 PCAACKLLRRRCAQECPFAPYFSPHEPQKFAAVHKVFGASNVSKMLSEVPEAQRSDVANSLVYEANARIRDPVYGCTGTISALQQQAQSLQAEVNAMREQI 106 7***********************************************************************************************99885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.728	5	106	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.6E-43	6	103	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0016020	Cellular Component	membrane

Sequence ? help Back to Top
Protein Sequence Length: 119 aa Download sequence Send to blast
LNTITPCAAC KLLRRRCAQE CPFAPYFSPH EPQKFAAVHK VFGASNVSKM LSEVPEAQRS 60 DVANSLVYEA NARIRDPVYG CTGTISALQQ QAQSLQAEVN AMREQIMRYQ VHENAVAAV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	8e-46	6	113	11	118	LOB family transfactor Ramosa2.1
5ly0_B	8e-46	6	113	11	118	LOB family transfactor Ramosa2.1
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00283	DAP	Transfer from AT2G30340	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	-	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002962437.2	4e-83	LOB domain-containing protein 15
Refseq	XP_002989392.2	5e-83	LOB domain-containing protein 15
Swissprot	Q9AT61	2e-60	LBD13_ARATH; LOB domain-containing protein 13
TrEMBL	D8QUM8	1e-82	D8QUM8_SELML; Uncharacterized protein (Fragment)
STRING	EFJ09483	2e-83	(Selaginella moellendorffii)
STRING	EFJ35900	2e-83	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP60	16	318

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	8e-58	LOB domain-containing protein 15

Link Out ? help Back to Top
Phytozome	37169
Entrez Gene	9650735 \| 9660801

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031] Cho C,Jeon E,Pandey SK,Ha SH,Kim J LBD13 positively regulates lateral root formation in Arabidopsis. Planta, 2019. 249(4): p. 1251-1258 [PMID:30627888]