PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

37324

Common Name

SELMODRAFT_126488

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

HSF

Protein Properties

Length: 176aa MW: 20216.9 Da PI: 10.0453

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
37324	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	117.3	8.9e-37	15	107	2	103
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl+k+y+++ed++++ ++sw+ +gn f+v++ +ef++++Lpk+Fkh+nf+SFvRQLn+YgF+kv+ ++ weF ++ F kgkk+ll+ i+ 37324 15 FLNKTYDMVEDPSTDPIVSWNPSGNGFIVWNLNEFQQQLLPKFFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFGNEGFLKGKKQLLKGIH 102 9**************************************************************999.........**************** PP XXXXX CS HSF_DNA-bind 99 rkkse 103 rkks+ 37324 103 RKKSA 107 986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	2.4E-39	5	98	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	1.33E-34	10	104	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	6.2E-57	11	104	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.4E-21	15	38	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	7.4E-32	15	104	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.4E-21	53	65	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	54	78	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.4E-21	66	78	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 176 aa Download sequence Send to blast
PAQPMDSSNS APPPFLNKTY DMVEDPSTDP IVSWNPSGNG FIVWNLNEFQ QQLLPKFFKH 60 NNFSSFVRQL NTYGFRKVDP DRWEFGNEGF LKGKKQLLKG IHRKKSASHQ PPAVQQPQPQ 120 PQPSSKPACV EVGKFGLEGE IERLKRDKNV LMSELVRLRQ QQQQTDSDLQ MILQRL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	2e-28	1	106	15	131	Heat shock factor protein 1
5d5v_B	2e-28	1	106	15	131	Heat shock factor protein 1
5d5v_D	2e-28	1	106	15	131	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not induced by heat stress. {ECO:0000269\|PubMed:18064488}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002987626.2	1e-125	heat stress transcription factor A-2e
Swissprot	Q84T61	3e-75	HSFA1_ORYSJ; Heat stress transcription factor A-1
TrEMBL	D8SWC4	1e-126	D8SWC4_SELML; Uncharacterized protein (Fragment)
STRING	EFJ11201	1e-127	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP96	17	233

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32330.1	2e-63	heat shock transcription factor A1D

Link Out ? help Back to Top
Phytozome	37324
Entrez Gene	9630277

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031] Chauhan H,Khurana N,Agarwal P,Khurana P Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress. Mol. Genet. Genomics, 2011. 286(2): p. 171-87 [PMID:21792744]