PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 38494
Common NameSELMODRAFT_38494, SELMODRAFT_38495
Organism
Selaginella moellendorffii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family ERF
Protein Properties Length: 81aa    MW: 9138.49 Da    PI: 10.6628
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
38494genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP269.55.8e-222374156
    AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56
           ++y+GVr++  +g+WvAeIr+p   + + +r++lg+f+ta eAa+a+++a++k++ge
  38494 23 CQYRGVRQRV-WGKWVAEIREP---N-CgARIWLGTFDTAVEAARAYDQAALKYFGE 74
           78******99.**********8...3.57*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.72E-282381No hitNo description
PfamPF008476.0E-152374IPR001471AP2/ERF domain
PROSITE profilePS5103222.262481IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-222481IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.9E-312481IPR001471AP2/ERF domain
SMARTSM003801.2E-302481IPR001471AP2/ERF domain
PRINTSPR003671.9E-112536IPR001471AP2/ERF domain
PRINTSPR003671.9E-114763IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0010286Biological Processheat acclimation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 81 aa     Download sequence    Send to blast
RPQLKRSRKG CMKGKGGPEN AACQYRGVRQ RVWGKWVAEI REPNCGARIW LGTFDTAVEA  60
ARAYDQAALK YFGENARLNL P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-182481563ATERF1
3gcc_A2e-182481563ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity-inducible transcription. {ECO:0000269|PubMed:11798174}.
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. {ECO:0000250, ECO:0000269|PubMed:11798174}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00302DAPTransfer from AT2G40340Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024529646.13e-53ethylene-responsive transcription factor ABI4-like
SwissprotP618274e-36DRE2G_ARATH; Dehydration-responsive element-binding protein 2G
SwissprotQ9LQZ21e-36DRE2D_ARATH; Dehydration-responsive element-binding protein 2D
TrEMBLD8RC201e-52D8RC20_SELML; Uncharacterized protein (Fragment)
STRINGEFJ089202e-53(Selaginella moellendorffii)
STRINGEFJ297742e-53(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75490.15e-39ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]