PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

38594

Common Name

SELMODRAFT_38592, SELMODRAFT_38594

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

bZIP

Protein Properties

Length: 70aa MW: 8541.4 Da PI: 9.9746

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
38594	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	59.7	6.1e-19	9	67	1	59
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevakl 59 e+elkr+rrkq+NRe+ArrsRqRK++e+eeL kv+ L++ N++Lk +l ++ +l 38594 9 ERELKRQRRKQSNRESARRSRQRKQKECEELSHKVEDLTQDNERLKAQLADVQEIKRQL 67 89********************************************9998877766665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	6.5E-18	2	68	No hit	No description
Pfam	PF00170	6.3E-17	9	68	IPR004827	Basic-leucine zipper domain
SMART	SM00338	1.0E-13	9	69	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	12.576	11	70	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	4.5E-12	12	67	No hit	No description
CDD	cd14702	9.83E-10	14	62	No hit	No description
PROSITE pattern	PS00036	0	16	31	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 70 aa Download sequence Send to blast
SSSFKSQDER ELKRQRRKQS NRESARRSRQ RKQKECEELS HKVEDLTQDN ERLKAQLADV 60 QEIKRQLEEE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	25	31	RRSRQRK
2	25	32	RRSRQRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds to the G-box motif (5'-CACGTG-3') and other cis-acting elements with 5'-ACGT-3' core, such as Hex, C-box and as-1 motifs. Possesses high binding affinity to G-box, much lower affinity to Hex and C-box, and little affinity to as-1 element (PubMed:18315949). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control (Probable). Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional repressor in light-regulated expression of LHCB2.4. Binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269\|PubMed:18315949, ECO:0000269\|PubMed:22718771, ECO:0000305\|PubMed:18315949}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002969834.2	2e-35	G-box-binding factor 1 isoform X1
Refseq	XP_002985171.2	2e-35	G-box-binding factor 1 isoform X1
Refseq	XP_024514968.1	2e-35	G-box-binding factor 1 isoform X1
Refseq	XP_024514969.1	2e-35	G-box-binding factor 1 isoform X2
Refseq	XP_024530398.1	3e-35	G-box-binding factor 1 isoform X2
Swissprot	Q501B2	3e-16	BZP16_ARATH; bZIP transcription factor 16
TrEMBL	D8RG10	3e-38	D8RG10_SELML; Uncharacterized protein (Fragment)
STRING	EFJ13665	5e-39	(Selaginella moellendorffii)
STRING	EFJ28958	5e-39	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP700	17	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35530.1	1e-18	basic region/leucine zipper transcription factor 16

Link Out ? help Back to Top
Phytozome	38594
Entrez Gene	9646266 \| 9649661

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]