PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

38997

Common Name

SELMODRAFT_28982, SELMODRAFT_38997

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

ZF-HD

Protein Properties

Length: 72aa MW: 7882.78 Da PI: 6.0772

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
38997	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	98.7	4.4e-31	2	56	3	60
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 +vrY+eClkNhAa +Ggha+DGCgEfmp+++ + ++++C AC+CHRnFHRreve e 38997 2 AVRYRECLKNHAAGIGGHALDGCGEFMPNKE---DESSMRCGACDCHRNFHRREVEGE 56 69************************944...469***************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	2.0E-18	2	56	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	6.2E-27	3	53	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	1.8E-28	4	53	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	26.522	5	52	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Sequence ? help Back to Top
Protein Sequence Length: 72 aa Download sequence Send to blast
KAVRYRECLK NHAAGIGGHA LDGCGEFMPN KEDESSMRCG ACDCHRNFHR REVEGEKPIC 60 DLCKEDDGTA GG

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024516488.1	5e-47	zinc-finger homeodomain protein 2-like
Refseq	XP_024538440.1	4e-47	zinc-finger homeodomain protein 7-like
Swissprot	O64722	8e-22	ZHD3_ARATH; Zinc-finger homeodomain protein 3
TrEMBL	D8S3H5	4e-45	D8S3H5_SELML; Uncharacterized protein (Fragment)
STRING	EFJ12039	7e-46	(Selaginella moellendorffii)
STRING	EFJ21268	7e-46	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP91	16	237

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02540.1	3e-24	homeobox protein 21

Link Out ? help Back to Top
Phytozome	38997
Entrez Gene	9642901 \| 9657582

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031] González-Grandío E, et al. Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254 [PMID:28028241] Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]