PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 39026
Common NameMICPUCDRAFT_39026
Organism
Micromonas pusilla CCMP1545
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla
Family MYB
Protein Properties Length: 369aa    MW: 38181.3 Da    PI: 9.8164
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
39026genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.91.7e-161459147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +++WT+eEde+l + ++ +G+g+W+++a+ +  gR+ k+c++rw + 
            39026 14 KNSWTPEEDERLRERIAAHGPGNWSAVAAFLE-GRSSKSCRLRWCNQ 59
                     679*****************************.***********985 PP
2Myb_DNA-binding56.37.6e-1866110147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg++T+eEd+l++ a++++G++ W+ I+r ++ gRt++q+k+r+++ 
            39026  66 RGPFTAEEDKLILAAHAMHGNK-WAIISRSIP-GRTDNQVKNRYNST 110
                      89********************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.511960IPR017930Myb domain
SuperFamilySSF466891.2E-3012107IPR009057Homeodomain-like
SMARTSM007173.3E-161362IPR001005SANT/Myb domain
CDDcd001672.15E-141658No hitNo description
Gene3DG3DSA:1.10.10.609.1E-251667IPR009057Homeodomain-like
PfamPF139214.6E-161776No hitNo description
PROSITE profilePS5129426.05761115IPR017930Myb domain
SMARTSM007175.2E-1765113IPR001005SANT/Myb domain
CDDcd001672.00E-1268111No hitNo description
Gene3DG3DSA:1.10.10.606.8E-2468113IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009751Biological Processresponse to salicylic acid
GO:0010200Biological Processresponse to chitin
GO:0048527Biological Processlateral root development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MTNVDEDGDD KMKKNSWTPE EDERLRERIA AHGPGNWSAV AAFLEGRSSK SCRLRWCNQL  60
NPDVKRGPFT AEEDKLILAA HAMHGNKWAI ISRSIPGRTD NQVKNRYNST LRRVSTTARR  120
ERDAVAKAPA KRKATNTEAA ASPGEAASPS AKRSKKPPPE RAPPTPTTVS PKRARAVSPS  180
SGSEVDETVT GLERLVQASF AVEREEGEER DSGFGIRDSG SDAATASAAV AAFDANANAT  240
VHGGFNIADQ ARIMMANIQM TAQLAQLAAM SRGAAPALSA PAGEGPGFGA TAAAATAAAA  300
PAFFGGGGGA AAAAASPPAS QNASTHGENH FLSHAHAQMM AATFAAAAAA DGGRRVLYTG  360
SHTTTSAW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-321211325126MYB TRANSFORMING PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00400DAPTransfer from AT3G50060Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003057507.10.0predicted protein
TrEMBLC1MN260.0C1MN26_MICPC; Predicted protein
STRINGXP_003057507.10.0(Micromonas pusilla)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1516114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67300.18e-38myb domain protein r1
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]