PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 39139
Common NameSELMODRAFT_39139
Organism
Selaginella moellendorffii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family MYB_related
Protein Properties Length: 59aa    MW: 7062.01 Da    PI: 10.8225
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
39139genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.22.5e-1030591647
                     HHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding 16 vkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +  l ++ W+ Ia++++ gRt++++k+ w+++
            39139 30 HSILRNR-WSVIASHIP-GRTDNEIKNQWNTH 59
                     7788999.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.0E-6123IPR009057Homeodomain-like
SuperFamilySSF466896.29E-14159IPR009057Homeodomain-like
PROSITE profilePS5129413.21059IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.6E-132759IPR009057Homeodomain-like
PfamPF002491.2E-82959IPR001005SANT/Myb domain
CDDcd001671.01E-63459No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 59 aa     Download sequence    Send to blast
CRLRWTNYLR PDIKRGGITA QDELPNIWLH SILRNRWSVI ASHIPGRTDN EIKNQWNTH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-1315845102B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250|UniProtKB:Q9M2D9}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) and gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002980305.23e-31transcription factor MYB53
RefseqXP_024518613.14e-31transcription factor MYB106
RefseqXP_024541225.14e-31transcription factor MYB106
RefseqXP_024541226.14e-31transcription factor MYB106-like
SwissprotQ9FJP21e-24MYB53_ARATH; Transcription factor MYB53
TrEMBLD8QVN01e-35D8QVN0_SELML; Uncharacterized protein (Fragment)
STRINGEFJ364842e-36(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65230.15e-27myb domain protein 53
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]