PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 39370
Common NameMICPUCDRAFT_39370
Organism
Micromonas pusilla CCMP1545
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla
Family GATA
Protein Properties Length: 440aa    MW: 45249.9 Da    PI: 5.1957
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
39370genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.38.9e-18401433133
   GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkk 33 
            C nC++ kTp+WR gp+g+ktLCnaCG++yrk 
  39370 401 CLNCQAQKTPQWRMGPEGPKTLCNACGVRYRKG 433
            99*****************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577161.47E-12394432No hitNo description
PROSITE profilePS5011412.163395431IPR000679Zinc finger, GATA-type
SMARTSM004011.1E-8395438IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.104.9E-14400432IPR013088Zinc finger, NHR/GATA-type
CDDcd002027.20E-12401432No hitNo description
PROSITE patternPS003440401426IPR000679Zinc finger, GATA-type
PfamPF003204.2E-15401433IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009845Biological Processseed germination
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MTDVARPLPL DTHSRQTSLS AADFLFDFSA AAPGGPLLTS NCATAAAQMA SLGAFVNVDD  60
ARETMDVGHA TDALARGDAS DVPTRAHLAG FSSRGEKTFD GSTTAHASTE TRGGKDEKAS  120
TSYANATTFP PANFGDLDAE QQADAFYEKG PLRTLSARTF DVLLNNSGVK DTEEWTALQN  180
LPSLPRDMSA VDICGDALTD RPSDAWAAWD DASLRAAREA ASAARARATR ARDDATRATA  240
AATALTIHAK EILDVATSVK LDKAGEAGST REDSGSGVVT PNVLSERGGG GGGGGGGGGF  300
GVGGFYADVS SPFLGGGRRS GRKRWRPAGS DDETDMEDDE NGVGVGVGVG IGVGNGIGNG  360
GARKPPARRA FVAADGETTD VRPMATDSII TASGKKMRRG CLNCQAQKTP QWRMGPEGPK  420
TLCNACGVRY RKGLPMDGV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003058152.10.0predicted protein
TrEMBLC1MQM70.0C1MQM7_MICPC; Predicted protein
STRINGXP_003058152.10.0(Micromonas pusilla)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP2201430
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.14e-14GATA transcription factor 12
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]