PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

39375

Common Name

SELMODRAFT_39374, SELMODRAFT_39375

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

HSF

Protein Properties

Length: 92aa MW: 10889.2 Da PI: 9.0467

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
39375	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	113.3	1.6e-35	2	92	2	101
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl+k++++++d+ ++++sw ++g++fvv+++ efa+++Lp+yFkh+nf+SFvRQLn+YgF+kv ++ weF+++ F+kg+++ll++i+ 39375 2 FLTKTFQLVDDPGSDDIVSWGSDGTTFVVWKPPEFATDLLPSYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFANEFFRKGERQLLSEIH 89 9***************************************************************99.........****************** PP XXX CS HSF_DNA-bind 99 rkk 101 r+k 39375 90 RRK 92 *96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	4.0E-54	1	91	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	9.07E-34	1	91	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	2.0E-37	1	91	IPR011991	Winged helix-turn-helix DNA-binding domain
PRINTS	PR00056	7.6E-21	2	25	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	5.6E-32	2	91	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	7.6E-21	40	52	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	41	65	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	7.6E-21	53	65	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 92 aa Download sequence Send to blast
PFLTKTFQLV DDPGSDDIVS WGSDGTTFVV WKPPEFATDL LPSYFKHNNF SSFVRQLNTY 60 GFRKVVPDRW EFANEFFRKG ERQLLSEIHR RK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ldu_A	1e-24	2	91	20	120	Heat shock factor protein 1
5d5u_B	2e-24	2	91	29	129	Heat shock factor protein 1
5d5v_B	2e-24	2	91	29	129	Heat shock factor protein 1
5d5v_D	2e-24	2	91	29	129	Heat shock factor protein 1
5hdg_A	1e-24	2	91	10	110	Heat shock factor protein 1
5hdn_A	1e-24	2	91	10	110	Heat shock factor protein 1
5hdn_B	1e-24	2	91	10	110	Heat shock factor protein 1
5hdn_C	1e-24	2	91	10	110	Heat shock factor protein 1
5hdn_D	1e-24	2	91	10	110	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002960464.2	2e-62	heat stress transcription factor B-4
Refseq	XP_024531396.1	2e-62	heat stress transcription factor B-4
Swissprot	Q9C635	1e-53	HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBL	D8QMW7	3e-61	D8QMW7_SELML; Uncharacterized protein (Fragment)
STRING	EFJ31857	5e-62	(Selaginella moellendorffii)
STRING	EFJ38003	5e-62	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP96	17	233

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G46264.1	4e-56	heat shock transcription factor B4

Link Out ? help Back to Top
Phytozome	39375
Entrez Gene	9631712 \| 9641999

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]